miRNA display CGI


Results 41 - 60 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 71790 0.66 0.640292
Target:  5'- aGCGuGGGCcaauucuucCUCCgcauagcgGCCGAAGCCgCCCg -3'
miRNA:   3'- cUGC-UCCGc--------GAGGa-------CGGCUUCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 78026 0.69 0.505377
Target:  5'- cGGCGAGGCuucGCUCCgugcGCCau-GCCCUg -3'
miRNA:   3'- -CUGCUCCG---CGAGGa---CGGcuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 80568 0.69 0.493372
Target:  5'- cGGCGGacccuucgcgcuccGGUGCcgCCUGUCGcGAGCCCCg -3'
miRNA:   3'- -CUGCU--------------CCGCGa-GGACGGC-UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 80999 0.66 0.669649
Target:  5'- cGACGuGGC-CUCCgccuuggugGUCGAAGCCagcggcgccuaCCCg -3'
miRNA:   3'- -CUGCuCCGcGAGGa--------CGGCUUCGG-----------GGG- -5'
24754 3' -61.8 NC_005264.1 + 87697 0.67 0.601097
Target:  5'- uGGCGuGGCcCUCguggaUGCCGAGGCCUUg -3'
miRNA:   3'- -CUGCuCCGcGAGg----ACGGCUUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 91061 0.69 0.477875
Target:  5'- -cCGAGGCGCUUCUGCaacGGCgCCa -3'
miRNA:   3'- cuGCUCCGCGAGGACGgcuUCGgGGg -5'
24754 3' -61.8 NC_005264.1 + 91359 0.67 0.591335
Target:  5'- uGAUGAucaaGGUuaUCCUGUCGGcaauGGCCUCCa -3'
miRNA:   3'- -CUGCU----CCGcgAGGACGGCU----UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 98487 0.67 0.591335
Target:  5'- -gUGGGGUGCUaaaguaUCUGCCGGAGgCgCCg -3'
miRNA:   3'- cuGCUCCGCGA------GGACGGCUUCgGgGG- -5'
24754 3' -61.8 NC_005264.1 + 101589 0.69 0.514696
Target:  5'- -cCGAGGCGCgCCgugaGCUGGAGCgCgCCa -3'
miRNA:   3'- cuGCUCCGCGaGGa---CGGCUUCGgG-GG- -5'
24754 3' -61.8 NC_005264.1 + 102203 0.7 0.4424
Target:  5'- aGGCGGGGaucaagcugcUGCUCCUGCgCGAgccGGCUgCCg -3'
miRNA:   3'- -CUGCUCC----------GCGAGGACG-GCU---UCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 104811 0.68 0.540189
Target:  5'- aGACGAgcgGGCGCcgcacgacggccugUCC-GCCGggGCCgCUg -3'
miRNA:   3'- -CUGCU---CCGCG--------------AGGaCGGCuuCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 106249 0.67 0.609901
Target:  5'- cGCGAGGCGCUcgcgCCUGCUGAcGGCggauuuaacgcgaUCCUu -3'
miRNA:   3'- cUGCUCCGCGA----GGACGGCU-UCG-------------GGGG- -5'
24754 3' -61.8 NC_005264.1 + 110837 0.66 0.698754
Target:  5'- aGCGGGGuCGCUCCgcGCgCGAcGUCCgCa -3'
miRNA:   3'- cUGCUCC-GCGAGGa-CG-GCUuCGGGgG- -5'
24754 3' -61.8 NC_005264.1 + 117512 0.7 0.459956
Target:  5'- gGGCGcGGCGCgUCUGCgGucGCUCCCc -3'
miRNA:   3'- -CUGCuCCGCGaGGACGgCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 118938 0.67 0.620679
Target:  5'- cGACGGccGCGCUCaucgucuCCGgcGCCCCCu -3'
miRNA:   3'- -CUGCUc-CGCGAGgac----GGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 119435 0.69 0.468871
Target:  5'- uGGCG-GGCGauCUCgCUGCCcAGGCCgCCCa -3'
miRNA:   3'- -CUGCuCCGC--GAG-GACGGcUUCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 119509 0.66 0.640292
Target:  5'- --aGGGcGUGCUCCgagGCgGcAGCCCUCg -3'
miRNA:   3'- cugCUC-CGCGAGGa--CGgCuUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 120509 0.68 0.523142
Target:  5'- gGGCGAGGCcCUCauagacaaacugcUUGCCGGcAGCCCUg -3'
miRNA:   3'- -CUGCUCCGcGAG-------------GACGGCU-UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 122774 0.71 0.376197
Target:  5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3'
miRNA:   3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 124243 0.66 0.679389
Target:  5'- cGGCGAGGCgaaGCUCUUcuuCCGcGGCCUCg -3'
miRNA:   3'- -CUGCUCCG---CGAGGAc--GGCuUCGGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.