miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 34132 0.67 0.591335
Target:  5'- -uCGAGGCGCgagCCcGCCu---CCCCCa -3'
miRNA:   3'- cuGCUCCGCGa--GGaCGGcuucGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 35497 0.66 0.669649
Target:  5'- gGACGAcGGCGacgCCgcgGCgcaGguGCCCCCg -3'
miRNA:   3'- -CUGCU-CCGCga-GGa--CGg--CuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 35807 0.71 0.376197
Target:  5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3'
miRNA:   3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 37124 0.72 0.351652
Target:  5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3'
miRNA:   3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 37265 1.1 0.000785
Target:  5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3'
miRNA:   3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 38653 0.66 0.659882
Target:  5'- cGACGAGGCcgGCaCCgacgacgacGgCGAcGCCCCCg -3'
miRNA:   3'- -CUGCUCCG--CGaGGa--------CgGCUuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 39522 0.71 0.3841
Target:  5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3'
miRNA:   3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 41427 0.66 0.698754
Target:  5'- cGGCGccGgGCUCCUGCgGGcgacGGCCaCUCg -3'
miRNA:   3'- -CUGCucCgCGAGGACGgCU----UCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 42364 0.69 0.468871
Target:  5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3'
miRNA:   3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 44583 0.67 0.591335
Target:  5'- cGACGAGGUGUUCgaGuUCGGcAGCUCCg -3'
miRNA:   3'- -CUGCUCCGCGAGgaC-GGCU-UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 47098 0.68 0.54305
Target:  5'- cGGCGAGaguauaGCGCUC--GCCGc-GCCCCCu -3'
miRNA:   3'- -CUGCUC------CGCGAGgaCGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 48138 0.67 0.607944
Target:  5'- -uCGAGGCGCacgagaccgcgcaaUCCUGCuCGgcGuggcugcaCCCCCg -3'
miRNA:   3'- cuGCUCCGCG--------------AGGACG-GCuuC--------GGGGG- -5'
24754 3' -61.8 NC_005264.1 + 49138 0.74 0.259136
Target:  5'- uGCGAGGCGCcUCUGCCcAAGCcuugcaCCCCg -3'
miRNA:   3'- cUGCUCCGCGaGGACGGcUUCG------GGGG- -5'
24754 3' -61.8 NC_005264.1 + 51721 0.68 0.533537
Target:  5'- uAC-AGGUGCUUUUGCCGGAGCCg-- -3'
miRNA:   3'- cUGcUCCGCGAGGACGGCUUCGGggg -5'
24754 3' -61.8 NC_005264.1 + 52223 0.69 0.496131
Target:  5'- aACGAuGG-GCUuuagggaaguUCUGCuCGggGCCCCCg -3'
miRNA:   3'- cUGCU-CCgCGA----------GGACG-GCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 57257 0.73 0.290155
Target:  5'- -uUGAGGCGCUCgaGCCcuAGCCCgCg -3'
miRNA:   3'- cuGCUCCGCGAGgaCGGcuUCGGGgG- -5'
24754 3' -61.8 NC_005264.1 + 63159 0.72 0.345696
Target:  5'- cGGCGAGG-GCaugaacCCUGCCGcguGGGCCCCg -3'
miRNA:   3'- -CUGCUCCgCGa-----GGACGGC---UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 69557 0.69 0.505377
Target:  5'- -uUGAGGCaUUCCUccacugaaGCCGggGCCCUg -3'
miRNA:   3'- cuGCUCCGcGAGGA--------CGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 70857 0.66 0.640292
Target:  5'- cGACGcGGCGUUCUgccaGCuCGGaguuucccucGGCCCCUg -3'
miRNA:   3'- -CUGCuCCGCGAGGa---CG-GCU----------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 71327 0.66 0.689093
Target:  5'- uGGCGAGuGCGCggcauucuacgCC-GCCGAAaCCCCg -3'
miRNA:   3'- -CUGCUC-CGCGa----------GGaCGGCUUcGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.