Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 5216 | 0.66 | 0.679389 |
Target: 5'- cGGCGAGGCgaaGCUCUUcuuCCGcGGCCUCg -3' miRNA: 3'- -CUGCUCCG---CGAGGAc--GGCuUCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 12130 | 0.66 | 0.679389 |
Target: 5'- uGGCG-GGCaGC-CCcGCCGAgAGCCCUg -3' miRNA: 3'- -CUGCuCCG-CGaGGaCGGCU-UCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 41427 | 0.66 | 0.698754 |
Target: 5'- cGGCGccGgGCUCCUGCgGGcgacGGCCaCUCg -3' miRNA: 3'- -CUGCucCgCGAGGACGgCU----UCGG-GGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 134804 | 0.66 | 0.698754 |
Target: 5'- cGGCGucGCGCgc--GCCGGAagaccucccGCCCCCg -3' miRNA: 3'- -CUGCucCGCGaggaCGGCUU---------CGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 162083 | 0.66 | 0.698754 |
Target: 5'- cGCGuAGGgGCUCC-GCCGAAGaCCa- -3' miRNA: 3'- cUGC-UCCgCGAGGaCGGCUUCgGGgg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 133710 | 0.66 | 0.698754 |
Target: 5'- cGCGcacuGGUGCUgCCUcugGCCGAcAGCCCUUg -3' miRNA: 3'- cUGCu---CCGCGA-GGA---CGGCU-UCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 153434 | 0.66 | 0.659882 |
Target: 5'- gGAUGAGGCGCagucauuggCgCUGCaCGAGGaCCUCa -3' miRNA: 3'- -CUGCUCCGCGa--------G-GACG-GCUUCgGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 110837 | 0.66 | 0.698754 |
Target: 5'- aGCGGGGuCGCUCCgcGCgCGAcGUCCgCa -3' miRNA: 3'- cUGCUCC-GCGAGGa-CG-GCUuCGGGgG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 38653 | 0.66 | 0.659882 |
Target: 5'- cGACGAGGCcgGCaCCgacgacgacGgCGAcGCCCCCg -3' miRNA: 3'- -CUGCUCCG--CGaGGa--------CgGCUuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 151855 | 0.67 | 0.620679 |
Target: 5'- -cUGAaGCGCUCggGaCCGAcgauAGCCCCCg -3' miRNA: 3'- cuGCUcCGCGAGgaC-GGCU----UCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 128540 | 0.67 | 0.601097 |
Target: 5'- aGGCGcGGCGC-CCUcgaGggGCCCUCg -3' miRNA: 3'- -CUGCuCCGCGaGGAcggCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 87697 | 0.67 | 0.601097 |
Target: 5'- uGGCGuGGCcCUCguggaUGCCGAGGCCUUg -3' miRNA: 3'- -CUGCuCCGcGAGg----ACGGCUUCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 48138 | 0.67 | 0.607944 |
Target: 5'- -uCGAGGCGCacgagaccgcgcaaUCCUGCuCGgcGuggcugcaCCCCCg -3' miRNA: 3'- cuGCUCCGCG--------------AGGACG-GCuuC--------GGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 106249 | 0.67 | 0.609901 |
Target: 5'- cGCGAGGCGCUcgcgCCUGCUGAcGGCggauuuaacgcgaUCCUu -3' miRNA: 3'- cUGCUCCGCGA----GGACGGCU-UCG-------------GGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 141087 | 0.67 | 0.626562 |
Target: 5'- ----cGGCGCUCaagacggccgccGCCGAAGgCCCCa -3' miRNA: 3'- cugcuCCGCGAGga----------CGGCUUCgGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 7852 | 0.67 | 0.610881 |
Target: 5'- -uUGAGGUaCagCUG-CGAGGCCCCCa -3' miRNA: 3'- cuGCUCCGcGagGACgGCUUCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 3813 | 0.67 | 0.610881 |
Target: 5'- cGAgGAGGUGCUcCCUGCgcgCGGAGaCCUgCu -3' miRNA: 3'- -CUgCUCCGCGA-GGACG---GCUUC-GGGgG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 118938 | 0.67 | 0.620679 |
Target: 5'- cGACGGccGCGCUCaucgucuCCGgcGCCCCCu -3' miRNA: 3'- -CUGCUc-CGCGAGgac----GGCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 127412 | 0.67 | 0.620679 |
Target: 5'- gGACGcGGCGCguugaagCUGCCGGAGCUgUUg -3' miRNA: 3'- -CUGCuCCGCGag-----GACGGCUUCGGgGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 154949 | 0.67 | 0.629504 |
Target: 5'- cGGCGAGGagaccuccgacgcCGCaUCUggggcGCCGAcgccGCCCCCa -3' miRNA: 3'- -CUGCUCC-------------GCG-AGGa----CGGCUu---CGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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