miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 149252 0.69 0.477875
Target:  5'- -gUGuGGCGCUgggGCCGAAGCCCUUu -3'
miRNA:   3'- cuGCuCCGCGAggaCGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 91061 0.69 0.477875
Target:  5'- -cCGAGGCGCUUCUGCaacGGCgCCa -3'
miRNA:   3'- cuGCUCCGCGAGGACGgcuUCGgGGg -5'
24754 3' -61.8 NC_005264.1 + 80568 0.69 0.493372
Target:  5'- cGGCGGacccuucgcgcuccGGUGCcgCCUGUCGcGAGCCCCg -3'
miRNA:   3'- -CUGCU--------------CCGCGa-GGACGGC-UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 52223 0.69 0.496131
Target:  5'- aACGAuGG-GCUuuagggaaguUCUGCuCGggGCCCCCg -3'
miRNA:   3'- cUGCU-CCgCGA----------GGACG-GCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 141468 0.69 0.504449
Target:  5'- cGGCGGGGC-CUCUUuccaccgGCCGAGGCggCCCg -3'
miRNA:   3'- -CUGCUCCGcGAGGA-------CGGCUUCGg-GGG- -5'
24754 3' -61.8 NC_005264.1 + 69557 0.69 0.505377
Target:  5'- -uUGAGGCaUUCCUccacugaaGCCGggGCCCUg -3'
miRNA:   3'- cuGCUCCGcGAGGA--------CGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 78026 0.69 0.505377
Target:  5'- cGGCGAGGCuucGCUCCgugcGCCau-GCCCUg -3'
miRNA:   3'- -CUGCUCCG---CGAGGa---CGGcuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 101589 0.69 0.514696
Target:  5'- -cCGAGGCGCgCCgugaGCUGGAGCgCgCCa -3'
miRNA:   3'- cuGCUCCGCGaGGa---CGGCUUCGgG-GG- -5'
24754 3' -61.8 NC_005264.1 + 120509 0.68 0.523142
Target:  5'- gGGCGAGGCcCUCauagacaaacugcUUGCCGGcAGCCCUg -3'
miRNA:   3'- -CUGCUCCGcGAG-------------GACGGCU-UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 26807 0.68 0.533537
Target:  5'- cACGAGGagaaGUgggCCgcGCCGcucuuGAGCCCCCa -3'
miRNA:   3'- cUGCUCCg---CGa--GGa-CGGC-----UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 51721 0.68 0.533537
Target:  5'- uAC-AGGUGCUUUUGCCGGAGCCg-- -3'
miRNA:   3'- cUGcUCCGCGAGGACGGCUUCGGggg -5'
24754 3' -61.8 NC_005264.1 + 104811 0.68 0.540189
Target:  5'- aGACGAgcgGGCGCcgcacgacggccugUCC-GCCGggGCCgCUg -3'
miRNA:   3'- -CUGCU---CCGCG--------------AGGaCGGCuuCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 10121 0.68 0.542096
Target:  5'- cGugGAGGCaaCUCCcacUGCCGAggauaguAGUCUCCa -3'
miRNA:   3'- -CugCUCCGc-GAGG---ACGGCU-------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 47098 0.68 0.54305
Target:  5'- cGGCGAGaguauaGCGCUC--GCCGc-GCCCCCu -3'
miRNA:   3'- -CUGCUC------CGCGAGgaCGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 150700 0.68 0.552617
Target:  5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3'
miRNA:   3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 31674 0.68 0.552617
Target:  5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3'
miRNA:   3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 7153 0.67 0.5816
Target:  5'- -cUGAGGCuacGC-CCUGCCGAGuacaCCCCg -3'
miRNA:   3'- cuGCUCCG---CGaGGACGGCUUcg--GGGG- -5'
24754 3' -61.8 NC_005264.1 + 98487 0.67 0.591335
Target:  5'- -gUGGGGUGCUaaaguaUCUGCCGGAGgCgCCg -3'
miRNA:   3'- cuGCUCCGCGA------GGACGGCUUCgGgGG- -5'
24754 3' -61.8 NC_005264.1 + 91359 0.67 0.591335
Target:  5'- uGAUGAucaaGGUuaUCCUGUCGGcaauGGCCUCCa -3'
miRNA:   3'- -CUGCU----CCGcgAGGACGGCU----UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 34132 0.67 0.591335
Target:  5'- -uCGAGGCGCgagCCcGCCu---CCCCCa -3'
miRNA:   3'- cuGCUCCGCGa--GGaCGGcuucGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.