miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 156292 1.1 0.000785
Target:  5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3'
miRNA:   3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 37265 1.1 0.000785
Target:  5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3'
miRNA:   3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 49138 0.74 0.259136
Target:  5'- uGCGAGGCGCcUCUGCCcAAGCcuugcaCCCCg -3'
miRNA:   3'- cUGCUCCGCGaGGACGGcUUCG------GGGG- -5'
24754 3' -61.8 NC_005264.1 + 12039 0.74 0.271207
Target:  5'- -uCGcuGCGCUCCUGCCccacacGCCCCCa -3'
miRNA:   3'- cuGCucCGCGAGGACGGcuu---CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 57257 0.73 0.290155
Target:  5'- -uUGAGGCGCUCgaGCCcuAGCCCgCg -3'
miRNA:   3'- cuGCUCCGCGAGgaCGGcuUCGGGgG- -5'
24754 3' -61.8 NC_005264.1 + 63159 0.72 0.345696
Target:  5'- cGGCGAGG-GCaugaacCCUGCCGcguGGGCCCCg -3'
miRNA:   3'- -CUGCUCCgCGa-----GGACGGC---UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 156151 0.72 0.351652
Target:  5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3'
miRNA:   3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 37124 0.72 0.351652
Target:  5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3'
miRNA:   3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 35807 0.71 0.376197
Target:  5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3'
miRNA:   3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 122774 0.71 0.376197
Target:  5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3'
miRNA:   3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 154833 0.71 0.376197
Target:  5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3'
miRNA:   3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 3748 0.71 0.376197
Target:  5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3'
miRNA:   3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 158549 0.71 0.3841
Target:  5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3'
miRNA:   3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 39522 0.71 0.3841
Target:  5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3'
miRNA:   3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 20144 0.7 0.433765
Target:  5'- aGGCGAuGGCGCgCC-GCCGgcGCCCa- -3'
miRNA:   3'- -CUGCU-CCGCGaGGaCGGCuuCGGGgg -5'
24754 3' -61.8 NC_005264.1 + 102203 0.7 0.4424
Target:  5'- aGGCGGGGaucaagcugcUGCUCCUGCgCGAgccGGCUgCCg -3'
miRNA:   3'- -CUGCUCC----------GCGAGGACG-GCU---UCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 117512 0.7 0.459956
Target:  5'- gGGCGcGGCGCgUCUGCgGucGCUCCCc -3'
miRNA:   3'- -CUGCuCCGCGaGGACGgCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 42364 0.69 0.468871
Target:  5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3'
miRNA:   3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 119435 0.69 0.468871
Target:  5'- uGGCG-GGCGauCUCgCUGCCcAGGCCgCCCa -3'
miRNA:   3'- -CUGCuCCGC--GAG-GACGGcUUCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 161391 0.69 0.468871
Target:  5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3'
miRNA:   3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.