miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 3748 0.71 0.376197
Target:  5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3'
miRNA:   3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 3813 0.67 0.610881
Target:  5'- cGAgGAGGUGCUcCCUGCgcgCGGAGaCCUgCu -3'
miRNA:   3'- -CUgCUCCGCGA-GGACG---GCUUC-GGGgG- -5'
24754 3' -61.8 NC_005264.1 + 5216 0.66 0.679389
Target:  5'- cGGCGAGGCgaaGCUCUUcuuCCGcGGCCUCg -3'
miRNA:   3'- -CUGCUCCG---CGAGGAc--GGCuUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 7153 0.67 0.5816
Target:  5'- -cUGAGGCuacGC-CCUGCCGAGuacaCCCCg -3'
miRNA:   3'- cuGCUCCG---CGaGGACGGCUUcg--GGGG- -5'
24754 3' -61.8 NC_005264.1 + 7646 0.66 0.659882
Target:  5'- cACGAaaCGCcgCCUGCCGGcucggagggcucGGCCUCCa -3'
miRNA:   3'- cUGCUccGCGa-GGACGGCU------------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 7852 0.67 0.610881
Target:  5'- -uUGAGGUaCagCUG-CGAGGCCCCCa -3'
miRNA:   3'- cuGCUCCGcGagGACgGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 8304 0.66 0.668674
Target:  5'- cGACGGGG-GCaCCUgcgccgcggcgucGCCGucGUCCCCu -3'
miRNA:   3'- -CUGCUCCgCGaGGA-------------CGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 8385 0.67 0.620679
Target:  5'- gGACGcGGCGCguugaagCUGCCGGAGCUgUUg -3'
miRNA:   3'- -CUGCuCCGCGag-----GACGGCUUCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 9513 0.67 0.601097
Target:  5'- aGGCGcGGCGC-CCUcgaGggGCCCUCg -3'
miRNA:   3'- -CUGCuCCGCGaGGAcggCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 10121 0.68 0.542096
Target:  5'- cGugGAGGCaaCUCCcacUGCCGAggauaguAGUCUCCa -3'
miRNA:   3'- -CugCUCCGc-GAGG---ACGGCU-------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 12039 0.74 0.271207
Target:  5'- -uCGcuGCGCUCCUGCCccacacGCCCCCa -3'
miRNA:   3'- cuGCucCGCGAGGACGGcuu---CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 12130 0.66 0.679389
Target:  5'- uGGCG-GGCaGC-CCcGCCGAgAGCCCUg -3'
miRNA:   3'- -CUGCuCCG-CGaGGaCGGCU-UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 16079 0.67 0.591335
Target:  5'- cGCGcGGCGCUUgcugUUGCCGGGuccgccGCCCUCg -3'
miRNA:   3'- cUGCuCCGCGAG----GACGGCUU------CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 19181 0.67 0.610881
Target:  5'- gGAUGAuG-GCUCCgggGCCGAccgucGGCCCCa -3'
miRNA:   3'- -CUGCUcCgCGAGGa--CGGCU-----UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 20144 0.7 0.433765
Target:  5'- aGGCGAuGGCGCgCC-GCCGgcGCCCa- -3'
miRNA:   3'- -CUGCU-CCGCGaGGaCGGCuuCGGGgg -5'
24754 3' -61.8 NC_005264.1 + 23338 0.66 0.669649
Target:  5'- --aGAGGCGUUCCUGCCu-AGCgaUCg -3'
miRNA:   3'- cugCUCCGCGAGGACGGcuUCGggGG- -5'
24754 3' -61.8 NC_005264.1 + 26807 0.68 0.533537
Target:  5'- cACGAGGagaaGUgggCCgcGCCGcucuuGAGCCCCCa -3'
miRNA:   3'- cUGCUCCg---CGa--GGa-CGGC-----UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 30712 0.66 0.679389
Target:  5'- aGACGAGuccGCGCUCCguucgGaauccUCGGAGCCCa- -3'
miRNA:   3'- -CUGCUC---CGCGAGGa----C-----GGCUUCGGGgg -5'
24754 3' -61.8 NC_005264.1 + 31674 0.68 0.552617
Target:  5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3'
miRNA:   3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 32829 0.67 0.620679
Target:  5'- -cUGAaGCGCUCggGaCCGAcgauAGCCCCCg -3'
miRNA:   3'- cuGCUcCGCGAGgaC-GGCU----UCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.