miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 162083 0.66 0.698754
Target:  5'- cGCGuAGGgGCUCC-GCCGAAGaCCa- -3'
miRNA:   3'- cUGC-UCCgCGAGGaCGGCUUCgGGgg -5'
24754 3' -61.8 NC_005264.1 + 161391 0.69 0.468871
Target:  5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3'
miRNA:   3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 160454 0.66 0.698754
Target:  5'- cGGCGccGgGCUCCUGCgGGcgacGGCCaCUCg -3'
miRNA:   3'- -CUGCucCgCGAGGACGgCU----UCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 159929 0.66 0.698754
Target:  5'- cGGCGAcuccGuCGCUCUcGCCGucGCCCUCc -3'
miRNA:   3'- -CUGCUc---C-GCGAGGaCGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 158549 0.71 0.3841
Target:  5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3'
miRNA:   3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 156292 1.1 0.000785
Target:  5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3'
miRNA:   3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 156151 0.72 0.351652
Target:  5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3'
miRNA:   3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 154949 0.67 0.629504
Target:  5'- cGGCGAGGagaccuccgacgcCGCaUCUggggcGCCGAcgccGCCCCCa -3'
miRNA:   3'- -CUGCUCC-------------GCG-AGGa----CGGCUu---CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 154833 0.71 0.376197
Target:  5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3'
miRNA:   3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 154524 0.66 0.669649
Target:  5'- gGACGAcGGCGacgCCgcgGCgcaGguGCCCCCg -3'
miRNA:   3'- -CUGCU-CCGCga-GGa--CGg--CuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 153434 0.66 0.659882
Target:  5'- gGAUGAGGCGCagucauuggCgCUGCaCGAGGaCCUCa -3'
miRNA:   3'- -CUGCUCCGCGa--------G-GACG-GCUUCgGGGG- -5'
24754 3' -61.8 NC_005264.1 + 153159 0.67 0.591335
Target:  5'- -uCGAGGCGCgagCCcGCCu---CCCCCa -3'
miRNA:   3'- cuGCUCCGCGa--GGaCGGcuucGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 151855 0.67 0.620679
Target:  5'- -cUGAaGCGCUCggGaCCGAcgauAGCCCCCg -3'
miRNA:   3'- cuGCUcCGCGAGgaC-GGCU----UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 151774 0.66 0.659882
Target:  5'- uACGAGGCGgguaCUUGCCccgccAGGCCCCg -3'
miRNA:   3'- cUGCUCCGCga--GGACGGc----UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 150700 0.68 0.552617
Target:  5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3'
miRNA:   3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 149738 0.66 0.679389
Target:  5'- aGACGAGuccGCGCUCCguucgGaauccUCGGAGCCCa- -3'
miRNA:   3'- -CUGCUC---CGCGAGGa----C-----GGCUUCGGGgg -5'
24754 3' -61.8 NC_005264.1 + 149252 0.69 0.477875
Target:  5'- -gUGuGGCGCUgggGCCGAAGCCCUUu -3'
miRNA:   3'- cuGCuCCGCGAggaCGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 141468 0.69 0.504449
Target:  5'- cGGCGGGGC-CUCUUuccaccgGCCGAGGCggCCCg -3'
miRNA:   3'- -CUGCUCCGcGAGGA-------CGGCUUCGg-GGG- -5'
24754 3' -61.8 NC_005264.1 + 141087 0.67 0.626562
Target:  5'- ----cGGCGCUCaagacggccgccGCCGAAGgCCCCa -3'
miRNA:   3'- cugcuCCGCGAGga----------CGGCUUCgGGGG- -5'
24754 3' -61.8 NC_005264.1 + 134804 0.66 0.698754
Target:  5'- cGGCGucGCGCgc--GCCGGAagaccucccGCCCCCg -3'
miRNA:   3'- -CUGCucCGCGaggaCGGCUU---------CGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.