miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 106249 0.67 0.609901
Target:  5'- cGCGAGGCGCUcgcgCCUGCUGAcGGCggauuuaacgcgaUCCUu -3'
miRNA:   3'- cUGCUCCGCGA----GGACGGCU-UCG-------------GGGG- -5'
24754 3' -61.8 NC_005264.1 + 10121 0.68 0.542096
Target:  5'- cGugGAGGCaaCUCCcacUGCCGAggauaguAGUCUCCa -3'
miRNA:   3'- -CugCUCCGc-GAGG---ACGGCU-------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 47098 0.68 0.54305
Target:  5'- cGGCGAGaguauaGCGCUC--GCCGc-GCCCCCu -3'
miRNA:   3'- -CUGCUC------CGCGAGgaCGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 150700 0.68 0.552617
Target:  5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3'
miRNA:   3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 7153 0.67 0.5816
Target:  5'- -cUGAGGCuacGC-CCUGCCGAGuacaCCCCg -3'
miRNA:   3'- cuGCUCCG---CGaGGACGGCUUcg--GGGG- -5'
24754 3' -61.8 NC_005264.1 + 153159 0.67 0.591335
Target:  5'- -uCGAGGCGCgagCCcGCCu---CCCCCa -3'
miRNA:   3'- cuGCUCCGCGa--GGaCGGcuucGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 128540 0.67 0.601097
Target:  5'- aGGCGcGGCGC-CCUcgaGggGCCCUCg -3'
miRNA:   3'- -CUGCuCCGCGaGGAcggCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 87697 0.67 0.601097
Target:  5'- uGGCGuGGCcCUCguggaUGCCGAGGCCUUg -3'
miRNA:   3'- -CUGCuCCGcGAGg----ACGGCUUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 48138 0.67 0.607944
Target:  5'- -uCGAGGCGCacgagaccgcgcaaUCCUGCuCGgcGuggcugcaCCCCCg -3'
miRNA:   3'- cuGCUCCGCG--------------AGGACG-GCuuC--------GGGGG- -5'
24754 3' -61.8 NC_005264.1 + 78026 0.69 0.505377
Target:  5'- cGGCGAGGCuucGCUCCgugcGCCau-GCCCUg -3'
miRNA:   3'- -CUGCUCCG---CGAGGa---CGGcuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 80568 0.69 0.493372
Target:  5'- cGGCGGacccuucgcgcuccGGUGCcgCCUGUCGcGAGCCCCg -3'
miRNA:   3'- -CUGCU--------------CCGCGa-GGACGGC-UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 91061 0.69 0.477875
Target:  5'- -cCGAGGCGCUUCUGCaacGGCgCCa -3'
miRNA:   3'- cuGCUCCGCGAGGACGgcuUCGgGGg -5'
24754 3' -61.8 NC_005264.1 + 12039 0.74 0.271207
Target:  5'- -uCGcuGCGCUCCUGCCccacacGCCCCCa -3'
miRNA:   3'- cuGCucCGCGAGGACGGcuu---CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 63159 0.72 0.345696
Target:  5'- cGGCGAGG-GCaugaacCCUGCCGcguGGGCCCCg -3'
miRNA:   3'- -CUGCUCCgCGa-----GGACGGC---UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 156151 0.72 0.351652
Target:  5'- gGGCGAGGCggccgucucggccucGCUgcuggcgccaggaucUCUGCCGGAGCUUCCg -3'
miRNA:   3'- -CUGCUCCG---------------CGA---------------GGACGGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 122774 0.71 0.376197
Target:  5'- aGCGGGGC-CUCUUGCCGccggggcgcugcGGGCCCUUg -3'
miRNA:   3'- cUGCUCCGcGAGGACGGC------------UUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 154833 0.71 0.376197
Target:  5'- uGGCG-GGCGCcUCUGCCG--GCCCCg -3'
miRNA:   3'- -CUGCuCCGCGaGGACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 158549 0.71 0.3841
Target:  5'- gGACGAuaaggacGUGCUCuCUGCCGccGCCCCg -3'
miRNA:   3'- -CUGCUc------CGCGAG-GACGGCuuCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 117512 0.7 0.459956
Target:  5'- gGGCGcGGCGCgUCUGCgGucGCUCCCc -3'
miRNA:   3'- -CUGCuCCGCGaGGACGgCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 161391 0.69 0.468871
Target:  5'- cGGCGAuGGCcggugcugGCUCCcGCgGAGGCCCUUu -3'
miRNA:   3'- -CUGCU-CCG--------CGAGGaCGgCUUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.