Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 134804 | 0.66 | 0.698754 |
Target: 5'- cGGCGucGCGCgc--GCCGGAagaccucccGCCCCCg -3' miRNA: 3'- -CUGCucCGCGaggaCGGCUU---------CGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 9513 | 0.67 | 0.601097 |
Target: 5'- aGGCGcGGCGC-CCUcgaGggGCCCUCg -3' miRNA: 3'- -CUGCuCCGCGaGGAcggCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 44583 | 0.67 | 0.591335 |
Target: 5'- cGACGAGGUGUUCgaGuUCGGcAGCUCCg -3' miRNA: 3'- -CUGCUCCGCGAGgaC-GGCU-UCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 37265 | 1.1 | 0.000785 |
Target: 5'- gGACGAGGCGCUCCUGCCGAAGCCCCCu -3' miRNA: 3'- -CUGCUCCGCGAGGACGGCUUCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 5216 | 0.66 | 0.679389 |
Target: 5'- cGGCGAGGCgaaGCUCUUcuuCCGcGGCCUCg -3' miRNA: 3'- -CUGCUCCG---CGAGGAc--GGCuUCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 30712 | 0.66 | 0.679389 |
Target: 5'- aGACGAGuccGCGCUCCguucgGaauccUCGGAGCCCa- -3' miRNA: 3'- -CUGCUC---CGCGAGGa----C-----GGCUUCGGGgg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 35497 | 0.66 | 0.669649 |
Target: 5'- gGACGAcGGCGacgCCgcgGCgcaGguGCCCCCg -3' miRNA: 3'- -CUGCU-CCGCga-GGa--CGg--CuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 8304 | 0.66 | 0.668674 |
Target: 5'- cGACGGGG-GCaCCUgcgccgcggcgucGCCGucGUCCCCu -3' miRNA: 3'- -CUGCUCCgCGaGGA-------------CGGCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 151774 | 0.66 | 0.659882 |
Target: 5'- uACGAGGCGgguaCUUGCCccgccAGGCCCCg -3' miRNA: 3'- cUGCUCCGCga--GGACGGc----UUCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 19181 | 0.67 | 0.610881 |
Target: 5'- gGAUGAuG-GCUCCgggGCCGAccgucGGCCCCa -3' miRNA: 3'- -CUGCUcCgCGAGGa--CGGCU-----UCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 119509 | 0.66 | 0.640292 |
Target: 5'- --aGGGcGUGCUCCgagGCgGcAGCCCUCg -3' miRNA: 3'- cugCUC-CGCGAGGa--CGgCuUCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 38653 | 0.66 | 0.659882 |
Target: 5'- cGACGAGGCcgGCaCCgacgacgacGgCGAcGCCCCCg -3' miRNA: 3'- -CUGCUCCG--CGaGGa--------CgGCUuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 162083 | 0.66 | 0.698754 |
Target: 5'- cGCGuAGGgGCUCC-GCCGAAGaCCa- -3' miRNA: 3'- cUGC-UCCgCGAGGaCGGCUUCgGGgg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 32829 | 0.67 | 0.620679 |
Target: 5'- -cUGAaGCGCUCggGaCCGAcgauAGCCCCCg -3' miRNA: 3'- cuGCUcCGCGAGgaC-GGCU----UCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 41427 | 0.66 | 0.698754 |
Target: 5'- cGGCGccGgGCUCCUGCgGGcgacGGCCaCUCg -3' miRNA: 3'- -CUGCucCgCGAGGACGgCU----UCGG-GGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 153434 | 0.66 | 0.659882 |
Target: 5'- gGAUGAGGCGCagucauuggCgCUGCaCGAGGaCCUCa -3' miRNA: 3'- -CUGCUCCGCGa--------G-GACG-GCUUCgGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 8385 | 0.67 | 0.620679 |
Target: 5'- gGACGcGGCGCguugaagCUGCCGGAGCUgUUg -3' miRNA: 3'- -CUGCuCCGCGag-----GACGGCUUCGGgGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 91359 | 0.67 | 0.591335 |
Target: 5'- uGAUGAucaaGGUuaUCCUGUCGGcaauGGCCUCCa -3' miRNA: 3'- -CUGCU----CCGcgAGGACGGCU----UCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 12130 | 0.66 | 0.679389 |
Target: 5'- uGGCG-GGCaGC-CCcGCCGAgAGCCCUg -3' miRNA: 3'- -CUGCuCCG-CGaGGaCGGCU-UCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 125174 | 0.66 | 0.669649 |
Target: 5'- -gUGGGGCGCcgaugCCggcaaCCGAAGCCUUCa -3' miRNA: 3'- cuGCUCCGCGa----GGac---GGCUUCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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