miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 8304 0.66 0.668674
Target:  5'- cGACGGGG-GCaCCUgcgccgcggcgucGCCGucGUCCCCu -3'
miRNA:   3'- -CUGCUCCgCGaGGA-------------CGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 153434 0.66 0.659882
Target:  5'- gGAUGAGGCGCagucauuggCgCUGCaCGAGGaCCUCa -3'
miRNA:   3'- -CUGCUCCGCGa--------G-GACG-GCUUCgGGGG- -5'
24754 3' -61.8 NC_005264.1 + 126673 0.66 0.659882
Target:  5'- cACGAaaCGCcgCCUGCCGGcucggagggcucGGCCUCCa -3'
miRNA:   3'- cUGCUccGCGa-GGACGGCU------------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 38653 0.66 0.659882
Target:  5'- cGACGAGGCcgGCaCCgacgacgacGgCGAcGCCCCCg -3'
miRNA:   3'- -CUGCUCCG--CGaGGa--------CgGCUuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 151774 0.66 0.659882
Target:  5'- uACGAGGCGgguaCUUGCCccgccAGGCCCCg -3'
miRNA:   3'- cUGCUCCGCga--GGACGGc----UUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 7646 0.66 0.659882
Target:  5'- cACGAaaCGCcgCCUGCCGGcucggagggcucGGCCUCCa -3'
miRNA:   3'- cUGCUccGCGa-GGACGGCU------------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 71790 0.66 0.640292
Target:  5'- aGCGuGGGCcaauucuucCUCCgcauagcgGCCGAAGCCgCCCg -3'
miRNA:   3'- cUGC-UCCGc--------GAGGa-------CGGCUUCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 119509 0.66 0.640292
Target:  5'- --aGGGcGUGCUCCgagGCgGcAGCCCUCg -3'
miRNA:   3'- cugCUC-CGCGAGGa--CGgCuUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 70857 0.66 0.640292
Target:  5'- cGACGcGGCGUUCUgccaGCuCGGaguuucccucGGCCCCUg -3'
miRNA:   3'- -CUGCuCCGCGAGGa---CG-GCU----------UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 154949 0.67 0.629504
Target:  5'- cGGCGAGGagaccuccgacgcCGCaUCUggggcGCCGAcgccGCCCCCa -3'
miRNA:   3'- -CUGCUCC-------------GCG-AGGa----CGGCUu---CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 141087 0.67 0.626562
Target:  5'- ----cGGCGCUCaagacggccgccGCCGAAGgCCCCa -3'
miRNA:   3'- cugcuCCGCGAGga----------CGGCUUCgGGGG- -5'
24754 3' -61.8 NC_005264.1 + 151855 0.67 0.620679
Target:  5'- -cUGAaGCGCUCggGaCCGAcgauAGCCCCCg -3'
miRNA:   3'- cuGCUcCGCGAGgaC-GGCU----UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 32829 0.67 0.620679
Target:  5'- -cUGAaGCGCUCggGaCCGAcgauAGCCCCCg -3'
miRNA:   3'- cuGCUcCGCGAGgaC-GGCU----UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 8385 0.67 0.620679
Target:  5'- gGACGcGGCGCguugaagCUGCCGGAGCUgUUg -3'
miRNA:   3'- -CUGCuCCGCGag-----GACGGCUUCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 118938 0.67 0.620679
Target:  5'- cGACGGccGCGCUCaucgucuCCGgcGCCCCCu -3'
miRNA:   3'- -CUGCUc-CGCGAGgac----GGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 127412 0.67 0.620679
Target:  5'- gGACGcGGCGCguugaagCUGCCGGAGCUgUUg -3'
miRNA:   3'- -CUGCuCCGCGag-----GACGGCUUCGGgGG- -5'
24754 3' -61.8 NC_005264.1 + 7852 0.67 0.610881
Target:  5'- -uUGAGGUaCagCUG-CGAGGCCCCCa -3'
miRNA:   3'- cuGCUCCGcGagGACgGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 3813 0.67 0.610881
Target:  5'- cGAgGAGGUGCUcCCUGCgcgCGGAGaCCUgCu -3'
miRNA:   3'- -CUgCUCCGCGA-GGACG---GCUUC-GGGgG- -5'
24754 3' -61.8 NC_005264.1 + 19181 0.67 0.610881
Target:  5'- gGAUGAuG-GCUCCgggGCCGAccgucGGCCCCa -3'
miRNA:   3'- -CUGCUcCgCGAGGa--CGGCU-----UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 106249 0.67 0.609901
Target:  5'- cGCGAGGCGCUcgcgCCUGCUGAcGGCggauuuaacgcgaUCCUu -3'
miRNA:   3'- cUGCUCCGCGA----GGACGGCU-UCG-------------GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.