Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24754 | 3' | -61.8 | NC_005264.1 | + | 48138 | 0.67 | 0.607944 |
Target: 5'- -uCGAGGCGCacgagaccgcgcaaUCCUGCuCGgcGuggcugcaCCCCCg -3' miRNA: 3'- cuGCUCCGCG--------------AGGACG-GCuuC--------GGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 9513 | 0.67 | 0.601097 |
Target: 5'- aGGCGcGGCGC-CCUcgaGggGCCCUCg -3' miRNA: 3'- -CUGCuCCGCGaGGAcggCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 87697 | 0.67 | 0.601097 |
Target: 5'- uGGCGuGGCcCUCguggaUGCCGAGGCCUUg -3' miRNA: 3'- -CUGCuCCGcGAGg----ACGGCUUCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 128540 | 0.67 | 0.601097 |
Target: 5'- aGGCGcGGCGC-CCUcgaGggGCCCUCg -3' miRNA: 3'- -CUGCuCCGCGaGGAcggCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 34132 | 0.67 | 0.591335 |
Target: 5'- -uCGAGGCGCgagCCcGCCu---CCCCCa -3' miRNA: 3'- cuGCUCCGCGa--GGaCGGcuucGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 98487 | 0.67 | 0.591335 |
Target: 5'- -gUGGGGUGCUaaaguaUCUGCCGGAGgCgCCg -3' miRNA: 3'- cuGCUCCGCGA------GGACGGCUUCgGgGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 44583 | 0.67 | 0.591335 |
Target: 5'- cGACGAGGUGUUCgaGuUCGGcAGCUCCg -3' miRNA: 3'- -CUGCUCCGCGAGgaC-GGCU-UCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 16079 | 0.67 | 0.591335 |
Target: 5'- cGCGcGGCGCUUgcugUUGCCGGGuccgccGCCCUCg -3' miRNA: 3'- cUGCuCCGCGAG----GACGGCUU------CGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 91359 | 0.67 | 0.591335 |
Target: 5'- uGAUGAucaaGGUuaUCCUGUCGGcaauGGCCUCCa -3' miRNA: 3'- -CUGCU----CCGcgAGGACGGCU----UCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 153159 | 0.67 | 0.591335 |
Target: 5'- -uCGAGGCGCgagCCcGCCu---CCCCCa -3' miRNA: 3'- cuGCUCCGCGa--GGaCGGcuucGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 7153 | 0.67 | 0.5816 |
Target: 5'- -cUGAGGCuacGC-CCUGCCGAGuacaCCCCg -3' miRNA: 3'- cuGCUCCG---CGaGGACGGCUUcg--GGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 31674 | 0.68 | 0.552617 |
Target: 5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3' miRNA: 3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 150700 | 0.68 | 0.552617 |
Target: 5'- cGCGAGGCaggGCUCUcGgCGggGCUgCCCg -3' miRNA: 3'- cUGCUCCG---CGAGGaCgGCuuCGG-GGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 47098 | 0.68 | 0.54305 |
Target: 5'- cGGCGAGaguauaGCGCUC--GCCGc-GCCCCCu -3' miRNA: 3'- -CUGCUC------CGCGAGgaCGGCuuCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 10121 | 0.68 | 0.542096 |
Target: 5'- cGugGAGGCaaCUCCcacUGCCGAggauaguAGUCUCCa -3' miRNA: 3'- -CugCUCCGc-GAGG---ACGGCU-------UCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 104811 | 0.68 | 0.540189 |
Target: 5'- aGACGAgcgGGCGCcgcacgacggccugUCC-GCCGggGCCgCUg -3' miRNA: 3'- -CUGCU---CCGCG--------------AGGaCGGCuuCGGgGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 26807 | 0.68 | 0.533537 |
Target: 5'- cACGAGGagaaGUgggCCgcGCCGcucuuGAGCCCCCa -3' miRNA: 3'- cUGCUCCg---CGa--GGa-CGGC-----UUCGGGGG- -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 51721 | 0.68 | 0.533537 |
Target: 5'- uAC-AGGUGCUUUUGCCGGAGCCg-- -3' miRNA: 3'- cUGcUCCGCGAGGACGGCUUCGGggg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 120509 | 0.68 | 0.523142 |
Target: 5'- gGGCGAGGCcCUCauagacaaacugcUUGCCGGcAGCCCUg -3' miRNA: 3'- -CUGCUCCGcGAG-------------GACGGCU-UCGGGGg -5' |
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24754 | 3' | -61.8 | NC_005264.1 | + | 101589 | 0.69 | 0.514696 |
Target: 5'- -cCGAGGCGCgCCgugaGCUGGAGCgCgCCa -3' miRNA: 3'- cuGCUCCGCGaGGa---CGGCUUCGgG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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