Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 156329 | 1.08 | 0.005853 |
Target: 5'- uACGUGUACUACGGCAAGACCGGCUACc -3' miRNA: 3'- -UGCACAUGAUGCCGUUCUGGCCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 37302 | 1.08 | 0.005853 |
Target: 5'- uACGUGUACUACGGCAAGACCGGCUACc -3' miRNA: 3'- -UGCACAUGAUGCCGUUCUGGCCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 117092 | 0.76 | 0.545375 |
Target: 5'- cUGUGUGCUagauACGGCAcGACCGcgcGCUGCa -3' miRNA: 3'- uGCACAUGA----UGCCGUuCUGGC---CGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 162237 | 0.76 | 0.555555 |
Target: 5'- gGCGggggggggGgggGCUACGGCGGGGCUGGCggGCg -3' miRNA: 3'- -UGCa-------Ca--UGAUGCCGUUCUGGCCGa-UG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 43210 | 0.76 | 0.555555 |
Target: 5'- gGCGggggggggGgggGCUACGGCGGGGCUGGCggGCg -3' miRNA: 3'- -UGCa-------Ca--UGAUGCCGUUCUGGCCGa-UG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 75090 | 0.75 | 0.607139 |
Target: 5'- cGCG-GcGCUGCGGCAGGcGCCGGCg-- -3' miRNA: 3'- -UGCaCaUGAUGCCGUUC-UGGCCGaug -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 130558 | 0.73 | 0.679917 |
Target: 5'- cGCGUGUGCUACGcGCAGGucucgcucUCGGCUc- -3' miRNA: 3'- -UGCACAUGAUGC-CGUUCu-------GGCCGAug -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 58356 | 0.73 | 0.710675 |
Target: 5'- cUGUcGUACUcUGGCGGGGCCGGCg-- -3' miRNA: 3'- uGCA-CAUGAuGCCGUUCUGGCCGaug -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 144232 | 0.71 | 0.824868 |
Target: 5'- cACGUccGCUGCGGUcuucuCCGGCUGCu -3' miRNA: 3'- -UGCAcaUGAUGCCGuucu-GGCCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 19215 | 0.7 | 0.84994 |
Target: 5'- -gGUGUGCaGgGaGCAGGGCCGGCa-- -3' miRNA: 3'- ugCACAUGaUgC-CGUUCUGGCCGaug -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 68395 | 0.69 | 0.901001 |
Target: 5'- aACGacucgcuCUGCGGgAGGACgGGCUGCu -3' miRNA: 3'- -UGCacau---GAUGCCgUUCUGgCCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 79064 | 0.69 | 0.903575 |
Target: 5'- gGCGUGUACUAcgagguuauacucacCGGCgAGGGCUGuCUGCc -3' miRNA: 3'- -UGCACAUGAU---------------GCCG-UUCUGGCcGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 87229 | 0.69 | 0.907364 |
Target: 5'- cCGUGUACgugaaaGGCAuggAGGCCgacuacGGCUGCg -3' miRNA: 3'- uGCACAUGaug---CCGU---UCUGG------CCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 66958 | 0.68 | 0.912883 |
Target: 5'- aGCGUGUuuuuggugcccagGCggcACGGCAAGACCuGGUUu- -3' miRNA: 3'- -UGCACA-------------UGa--UGCCGUUCUGG-CCGAug -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 39094 | 0.68 | 0.935496 |
Target: 5'- gGCGg--GCaGCGGCGucuGGACCaGCUGCu -3' miRNA: 3'- -UGCacaUGaUGCCGU---UCUGGcCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 153873 | 0.68 | 0.935496 |
Target: 5'- cGCGguuuugGUGCUGCaGCGAGuugGCCGGCc-- -3' miRNA: 3'- -UGCa-----CAUGAUGcCGUUC---UGGCCGaug -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 110498 | 0.68 | 0.935496 |
Target: 5'- gACGUGUugUGgGGCAGcccgcccagcGACCcugaaGCUGCa -3' miRNA: 3'- -UGCACAugAUgCCGUU----------CUGGc----CGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 14094 | 0.68 | 0.935496 |
Target: 5'- --aUGUA-UACGGCugcuGGGCCGGCUcuGCa -3' miRNA: 3'- ugcACAUgAUGCCGu---UCUGGCCGA--UG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 158121 | 0.68 | 0.935496 |
Target: 5'- gGCGg--GCaGCGGCGucuGGACCaGCUGCu -3' miRNA: 3'- -UGCacaUGaUGCCGU---UCUGGcCGAUG- -5' |
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24754 | 5' | -53.3 | NC_005264.1 | + | 28417 | 0.67 | 0.939903 |
Target: 5'- uGCGUGUcGCgg-GGUAGGACCGaacggcaGCUGCg -3' miRNA: 3'- -UGCACA-UGaugCCGUUCUGGC-------CGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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