Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 49331 | 0.66 | 0.970012 |
Target: 5'- cGCGgcUGUucgcGCUcggcccggaggaacGCGGCAAGAUCGGCg-- -3' miRNA: 3'- -UGC--ACA----UGA--------------UGCCGUUCUGGCCGaug -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 55146 | 0.67 | 0.949416 |
Target: 5'- uGCGcUGUGCUggcgcagcguauGCGGCcucuGGGCgCGGCUGa -3' miRNA: 3'- -UGC-ACAUGA------------UGCCGu---UCUG-GCCGAUg -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 22842 | 0.67 | 0.953571 |
Target: 5'- gACGgGUACggACgGGCGAGGCCGcGCg-- -3' miRNA: 3'- -UGCaCAUGa-UG-CCGUUCUGGC-CGaug -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 68051 | 0.66 | 0.961178 |
Target: 5'- cCGUGcccgACgagGCGGCGAGAUCGGggAa -3' miRNA: 3'- uGCACa---UGa--UGCCGUUCUGGCCgaUg -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 157373 | 0.66 | 0.961178 |
Target: 5'- cCGUGaUGCUggGCGGCGGGG-CGGUUAg -3' miRNA: 3'- uGCAC-AUGA--UGCCGUUCUgGCCGAUg -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 18131 | 0.66 | 0.964637 |
Target: 5'- gACGUGcuUGCUGucUGGCGcGAgCGGCUAa -3' miRNA: 3'- -UGCAC--AUGAU--GCCGUuCUgGCCGAUg -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 158973 | 0.66 | 0.964637 |
Target: 5'- -gGUGggGCcACGGCGAccUCGGCUGCg -3' miRNA: 3'- ugCACa-UGaUGCCGUUcuGGCCGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 64265 | 0.66 | 0.967874 |
Target: 5'- ------cCUAuCGGUGAGGCUGGCUACg -3' miRNA: 3'- ugcacauGAU-GCCGUUCUGGCCGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 128803 | 0.66 | 0.969713 |
Target: 5'- uUGUGgcgACgaguuccuuggaaACGGCAAaauauuuacgcGGCCGGCUACa -3' miRNA: 3'- uGCACa--UGa------------UGCCGUU-----------CUGGCCGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 150851 | 0.67 | 0.943653 |
Target: 5'- gACGcGUACUcugccgugccgcgcGCGGCAAGACaugGGCgcgACc -3' miRNA: 3'- -UGCaCAUGA--------------UGCCGUUCUGg--CCGa--UG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 28417 | 0.67 | 0.939903 |
Target: 5'- uGCGUGUcGCgg-GGUAGGACCGaacggcaGCUGCg -3' miRNA: 3'- -UGCACA-UGaugCCGUUCUGGC-------CGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 158121 | 0.68 | 0.935496 |
Target: 5'- gGCGg--GCaGCGGCGucuGGACCaGCUGCu -3' miRNA: 3'- -UGCacaUGaUGCCGU---UCUGGcCGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 117092 | 0.76 | 0.545375 |
Target: 5'- cUGUGUGCUagauACGGCAcGACCGcgcGCUGCa -3' miRNA: 3'- uGCACAUGA----UGCCGUuCUGGC---CGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 162237 | 0.76 | 0.555555 |
Target: 5'- gGCGggggggggGgggGCUACGGCGGGGCUGGCggGCg -3' miRNA: 3'- -UGCa-------Ca--UGAUGCCGUUCUGGCCGa-UG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 75090 | 0.75 | 0.607139 |
Target: 5'- cGCG-GcGCUGCGGCAGGcGCCGGCg-- -3' miRNA: 3'- -UGCaCaUGAUGCCGUUC-UGGCCGaug -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 58356 | 0.73 | 0.710675 |
Target: 5'- cUGUcGUACUcUGGCGGGGCCGGCg-- -3' miRNA: 3'- uGCA-CAUGAuGCCGUUCUGGCCGaug -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 144232 | 0.71 | 0.824868 |
Target: 5'- cACGUccGCUGCGGUcuucuCCGGCUGCu -3' miRNA: 3'- -UGCAcaUGAUGCCGuucu-GGCCGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 19215 | 0.7 | 0.84994 |
Target: 5'- -gGUGUGCaGgGaGCAGGGCCGGCa-- -3' miRNA: 3'- ugCACAUGaUgC-CGUUCUGGCCGaug -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 68395 | 0.69 | 0.901001 |
Target: 5'- aACGacucgcuCUGCGGgAGGACgGGCUGCu -3' miRNA: 3'- -UGCacau---GAUGCCgUUCUGgCCGAUG- -5' |
|||||||
24754 | 5' | -53.3 | NC_005264.1 | + | 14094 | 0.68 | 0.935496 |
Target: 5'- --aUGUA-UACGGCugcuGGGCCGGCUcuGCa -3' miRNA: 3'- ugcACAUgAUGCCGu---UCUGGCCGA--UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home