miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 5' -53.3 NC_005264.1 + 9777 0.66 0.969713
Target:  5'- uUGUGgcgACgaguuccuuggaaACGGCAAaauauuuacgcGGCCGGCUACa -3'
miRNA:   3'- uGCACa--UGa------------UGCCGUU-----------CUGGCCGAUG- -5'
24754 5' -53.3 NC_005264.1 + 87229 0.69 0.907364
Target:  5'- cCGUGUACgugaaaGGCAuggAGGCCgacuacGGCUGCg -3'
miRNA:   3'- uGCACAUGaug---CCGU---UCUGG------CCGAUG- -5'
24754 5' -53.3 NC_005264.1 + 110498 0.68 0.935496
Target:  5'- gACGUGUugUGgGGCAGcccgcccagcGACCcugaaGCUGCa -3'
miRNA:   3'- -UGCACAugAUgCCGUU----------CUGGc----CGAUG- -5'
24754 5' -53.3 NC_005264.1 + 153873 0.68 0.935496
Target:  5'- cGCGguuuugGUGCUGCaGCGAGuugGCCGGCc-- -3'
miRNA:   3'- -UGCa-----CAUGAUGcCGUUC---UGGCCGaug -5'
24754 5' -53.3 NC_005264.1 + 31825 0.67 0.943653
Target:  5'- gACGcGUACUcugccgugccgcgcGCGGCAAGACaugGGCgcgACc -3'
miRNA:   3'- -UGCaCAUGA--------------UGCCGUUCUGg--CCGa--UG- -5'
24754 5' -53.3 NC_005264.1 + 151049 0.67 0.949416
Target:  5'- ----uUACuUGCGGCGAGGCuCGGcCUACg -3'
miRNA:   3'- ugcacAUG-AUGCCGUUCUG-GCC-GAUG- -5'
24754 5' -53.3 NC_005264.1 + 130558 0.73 0.679917
Target:  5'- cGCGUGUGCUACGcGCAGGucucgcucUCGGCUc- -3'
miRNA:   3'- -UGCACAUGAUGC-CGUUCu-------GGCCGAug -5'
24754 5' -53.3 NC_005264.1 + 66958 0.68 0.912883
Target:  5'- aGCGUGUuuuuggugcccagGCggcACGGCAAGACCuGGUUu- -3'
miRNA:   3'- -UGCACA-------------UGa--UGCCGUUCUGG-CCGAug -5'
24754 5' -53.3 NC_005264.1 + 79155 0.67 0.94038
Target:  5'- uCGUGUACUACacGCGcGGCCGGaaACa -3'
miRNA:   3'- uGCACAUGAUGc-CGUuCUGGCCgaUG- -5'
24754 5' -53.3 NC_005264.1 + 81750 0.66 0.961178
Target:  5'- uCGUGgcaaacccgGCgcucuCGGC-AGACCGGUUGCc -3'
miRNA:   3'- uGCACa--------UGau---GCCGuUCUGGCCGAUG- -5'
24754 5' -53.3 NC_005264.1 + 39946 0.66 0.964637
Target:  5'- -gGUGggGCcACGGCGAccUCGGCUGCg -3'
miRNA:   3'- ugCACa-UGaUGCCGUUcuGGCCGAUG- -5'
24754 5' -53.3 NC_005264.1 + 43210 0.76 0.555555
Target:  5'- gGCGggggggggGgggGCUACGGCGGGGCUGGCggGCg -3'
miRNA:   3'- -UGCa-------Ca--UGAUGCCGUUCUGGCCGa-UG- -5'
24754 5' -53.3 NC_005264.1 + 38346 0.66 0.961178
Target:  5'- cCGUGaUGCUggGCGGCGGGG-CGGUUAg -3'
miRNA:   3'- uGCAC-AUGA--UGCCGUUCUgGCCGAUg -5'
24754 5' -53.3 NC_005264.1 + 39094 0.68 0.935496
Target:  5'- gGCGg--GCaGCGGCGucuGGACCaGCUGCu -3'
miRNA:   3'- -UGCacaUGaUGCCGU---UCUGGcCGAUG- -5'
24754 5' -53.3 NC_005264.1 + 37302 1.08 0.005853
Target:  5'- uACGUGUACUACGGCAAGACCGGCUACc -3'
miRNA:   3'- -UGCACAUGAUGCCGUUCUGGCCGAUG- -5'
24754 5' -53.3 NC_005264.1 + 79064 0.69 0.903575
Target:  5'- gGCGUGUACUAcgagguuauacucacCGGCgAGGGCUGuCUGCc -3'
miRNA:   3'- -UGCACAUGAU---------------GCCG-UUCUGGCcGAUG- -5'
24754 5' -53.3 NC_005264.1 + 68051 0.66 0.961178
Target:  5'- cCGUGcccgACgagGCGGCGAGAUCGGggAa -3'
miRNA:   3'- uGCACa---UGa--UGCCGUUCUGGCCgaUg -5'
24754 5' -53.3 NC_005264.1 + 22842 0.67 0.953571
Target:  5'- gACGgGUACggACgGGCGAGGCCGcGCg-- -3'
miRNA:   3'- -UGCaCAUGa-UG-CCGUUCUGGC-CGaug -5'
24754 5' -53.3 NC_005264.1 + 55146 0.67 0.949416
Target:  5'- uGCGcUGUGCUggcgcagcguauGCGGCcucuGGGCgCGGCUGa -3'
miRNA:   3'- -UGC-ACAUGA------------UGCCGu---UCUG-GCCGAUg -5'
24754 5' -53.3 NC_005264.1 + 150851 0.67 0.943653
Target:  5'- gACGcGUACUcugccgugccgcgcGCGGCAAGACaugGGCgcgACc -3'
miRNA:   3'- -UGCaCAUGA--------------UGCCGUUCUGg--CCGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.