miRNA display CGI


Results 21 - 40 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 104432 0.66 0.709963
Target:  5'- aGCCGcCGAUGUCGaaCGaGCAAUGGCc -3'
miRNA:   3'- aCGGC-GCUGCGGCggGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 42975 0.66 0.719568
Target:  5'- gGCaGUGACGCUaaGCUCGUcgagGCAuauGCAGCa -3'
miRNA:   3'- aCGgCGCUGCGG--CGGGCA----CGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 97434 0.66 0.700297
Target:  5'- cGCUGCgGGCGCCGCCgCGgaucUGauaGACguAGCg -3'
miRNA:   3'- aCGGCG-CUGCGGCGG-GC----ACg--UUG--UCG- -5'
24755 5' -60.7 NC_005264.1 + 31168 0.66 0.729103
Target:  5'- aGCCGaCG-UGCCGCCaaCGgucugGCGGCGGg -3'
miRNA:   3'- aCGGC-GCuGCGGCGG--GCa----CGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 131922 0.66 0.719568
Target:  5'- gGaCCGuCGA-GCCGCCCG-GCcucGCAGUc -3'
miRNA:   3'- aC-GGC-GCUgCGGCGGGCaCGu--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 135572 0.66 0.719568
Target:  5'- aGCCGCG-CGUCGCUCGcGacuACGGg -3'
miRNA:   3'- aCGGCGCuGCGGCGGGCaCgu-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 27848 0.66 0.74793
Target:  5'- cUGUCGCGGCGgcauCCGCCCaaUGCGccGCcGCc -3'
miRNA:   3'- -ACGGCGCUGC----GGCGGGc-ACGU--UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 74741 0.66 0.74793
Target:  5'- cGCCGgcCGACGCUguGCCCGacGCGcACuGCu -3'
miRNA:   3'- aCGGC--GCUGCGG--CGGGCa-CGU-UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 6986 0.66 0.74793
Target:  5'- gUGgCGCGGgGuuGUCCcUGCgGGCGGCg -3'
miRNA:   3'- -ACgGCGCUgCggCGGGcACG-UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 150298 0.66 0.729103
Target:  5'- cGCgGCGaACGCCcCCCGcuccuaccgGCuagauGCAGCg -3'
miRNA:   3'- aCGgCGC-UGCGGcGGGCa--------CGu----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 43334 0.66 0.74793
Target:  5'- cUGCCGCcucggaGCaCGCCC-UGC-GCAGCc -3'
miRNA:   3'- -ACGGCGcug---CG-GCGGGcACGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 155784 0.66 0.719568
Target:  5'- cGCCGgcCGGCGCCGUcgCCGcuUGCGcGCAGa -3'
miRNA:   3'- aCGGC--GCUGCGGCG--GGC--ACGU-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 125749 0.66 0.74793
Target:  5'- cGCCGUccccgGAacUGCCGCCgCGUcGCuagaAACAGCc -3'
miRNA:   3'- aCGGCG-----CU--GCGGCGG-GCA-CG----UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 17694 0.66 0.74793
Target:  5'- gGCCGCGGCG--GCUCGUGuCGGguGUu -3'
miRNA:   3'- aCGGCGCUGCggCGGGCAC-GUUguCG- -5'
24755 5' -60.7 NC_005264.1 + 118942 0.66 0.706104
Target:  5'- gGCCGCGcucaucgucuccgGCGCCcccuuugccgcGCUCGUuccgucucuuccccGCGGCAGCc -3'
miRNA:   3'- aCGGCGC-------------UGCGG-----------CGGGCA--------------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 76657 0.66 0.719568
Target:  5'- gGCCGauGCgGCCaCCgGUGCGGCAGa -3'
miRNA:   3'- aCGGCgcUG-CGGcGGgCACGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 136582 0.66 0.74793
Target:  5'- cGCCGCGGaaUCGaCCCGUGgAAgcuggaacCAGCg -3'
miRNA:   3'- aCGGCGCUgcGGC-GGGCACgUU--------GUCG- -5'
24755 5' -60.7 NC_005264.1 + 159574 0.66 0.729103
Target:  5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3'
miRNA:   3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 24038 0.66 0.74793
Target:  5'- aGUCGUGACGCaCGUCUcuaugGCGgacACAGCc -3'
miRNA:   3'- aCGGCGCUGCG-GCGGGca---CGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 3433 0.66 0.74793
Target:  5'- gGCCGCGcccGCGCUGCUC--GCAA-AGCg -3'
miRNA:   3'- aCGGCGC---UGCGGCGGGcaCGUUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.