miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 118942 0.66 0.706104
Target:  5'- gGCCGCGcucaucgucuccgGCGCCcccuuugccgcGCUCGUuccgucucuuccccGCGGCAGCc -3'
miRNA:   3'- aCGGCGC-------------UGCGG-----------CGGGCA--------------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 31168 0.66 0.729103
Target:  5'- aGCCGaCG-UGCCGCCaaCGgucugGCGGCGGg -3'
miRNA:   3'- aCGGC-GCuGCGGCGG--GCa----CGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 13391 0.66 0.719568
Target:  5'- cG-CGCGAcgaugaugacCGCCGucaaCCCGaGCAACAGCc -3'
miRNA:   3'- aCgGCGCU----------GCGGC----GGGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 124494 0.66 0.709963
Target:  5'- -aCCGCccCGCCGCCCa-GCAucACGGCc -3'
miRNA:   3'- acGGCGcuGCGGCGGGcaCGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 17026 0.66 0.700297
Target:  5'- gGCgGCGAuCGUCGCCa--GCAgcGCGGCc -3'
miRNA:   3'- aCGgCGCU-GCGGCGGgcaCGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 56079 0.66 0.719568
Target:  5'- cGcCCGCuGACGCCGCgucUUGUGCGuGCcGCa -3'
miRNA:   3'- aC-GGCG-CUGCGGCG---GGCACGU-UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 25553 0.66 0.729103
Target:  5'- cGcCCGCGuCGCCGCCaacGCcGCGGa -3'
miRNA:   3'- aC-GGCGCuGCGGCGGgcaCGuUGUCg -5'
24755 5' -60.7 NC_005264.1 + 155784 0.66 0.719568
Target:  5'- cGCCGgcCGGCGCCGUcgCCGcuUGCGcGCAGa -3'
miRNA:   3'- aCGGC--GCUGCGGCG--GGC--ACGU-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 159302 0.66 0.700297
Target:  5'- aUGCUG-GACGCCGCCgCGUc--GCGGUu -3'
miRNA:   3'- -ACGGCgCUGCGGCGG-GCAcguUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 112201 0.66 0.710927
Target:  5'- aGCCGCGAcuuggacguuacuaCGCCGCgguucgaguacgguaCCGc-CGACGGCa -3'
miRNA:   3'- aCGGCGCU--------------GCGGCG---------------GGCacGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 104432 0.66 0.709963
Target:  5'- aGCCGcCGAUGUCGaaCGaGCAAUGGCc -3'
miRNA:   3'- aCGGC-GCUGCGGCggGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 76657 0.66 0.719568
Target:  5'- gGCCGauGCgGCCaCCgGUGCGGCAGa -3'
miRNA:   3'- aCGGCgcUG-CGGcGGgCACGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 97434 0.66 0.700297
Target:  5'- cGCUGCgGGCGCCGCCgCGgaucUGauaGACguAGCg -3'
miRNA:   3'- aCGGCG-CUGCGGCGG-GC----ACg--UUG--UCG- -5'
24755 5' -60.7 NC_005264.1 + 104979 0.66 0.71861
Target:  5'- gUGCCGCcgucucuGGCGCUGacgaCCGUuuGCAGC-GCa -3'
miRNA:   3'- -ACGGCG-------CUGCGGCg---GGCA--CGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 131922 0.66 0.719568
Target:  5'- gGaCCGuCGA-GCCGCCCG-GCcucGCAGUc -3'
miRNA:   3'- aC-GGC-GCUgCGGCGGGCaCGu--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 42975 0.66 0.719568
Target:  5'- gGCaGUGACGCUaaGCUCGUcgagGCAuauGCAGCa -3'
miRNA:   3'- aCGgCGCUGCGG--CGGGCA----CGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 150298 0.66 0.729103
Target:  5'- cGCgGCGaACGCCcCCCGcuccuaccgGCuagauGCAGCg -3'
miRNA:   3'- aCGgCGC-UGCGGcGGGCa--------CGu----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 7401 0.66 0.729103
Target:  5'- gGCCcCGGCGCCGUCguccauugguuCGUGCGcCGGg -3'
miRNA:   3'- aCGGcGCUGCGGCGG-----------GCACGUuGUCg -5'
24755 5' -60.7 NC_005264.1 + 150053 0.66 0.708999
Target:  5'- gGgCGaCGGUGCCGCCuagcgguCGUGCGGCuGCg -3'
miRNA:   3'- aCgGC-GCUGCGGCGG-------GCACGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 135572 0.66 0.719568
Target:  5'- aGCCGCG-CGUCGCUCGcGacuACGGg -3'
miRNA:   3'- aCGGCGCuGCGGCGGGCaCgu-UGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.