miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 158755 1.1 0.001007
Target:  5'- gUGCCGCGACGCCGCCCGUGCAACAGCc -3'
miRNA:   3'- -ACGGCGCUGCGGCGGGCACGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 39729 1.1 0.001007
Target:  5'- gUGCCGCGACGCCGCCCGUGCAACAGCc -3'
miRNA:   3'- -ACGGCGCUGCGGCGGGCACGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 30856 0.87 0.043393
Target:  5'- gGCgGCGgcGCGCCGCCCGguagGCAACGGCg -3'
miRNA:   3'- aCGgCGC--UGCGGCGGGCa---CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 149882 0.87 0.043393
Target:  5'- gGCgGCGgcGCGCCGCCCGguagGCAACGGCg -3'
miRNA:   3'- aCGgCGC--UGCGGCGGGCa---CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 70666 0.83 0.081859
Target:  5'- gGCCGCGGCGCCGCCggcaggcaauuuuuaCGcccgcggGCGACAGCg -3'
miRNA:   3'- aCGGCGCUGCGGCGG---------------GCa------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 76070 0.82 0.085294
Target:  5'- cGCCGCGACGCCGCgagCGU-CGACGGCu -3'
miRNA:   3'- aCGGCGCUGCGGCGg--GCAcGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 23754 0.8 0.115768
Target:  5'- aGCCGCGACGUCGUaauagGCGACAGCa -3'
miRNA:   3'- aCGGCGCUGCGGCGggca-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 60614 0.79 0.141449
Target:  5'- aUGCCGCGGCaGCCgGCUCGcGCAggaGCAGCa -3'
miRNA:   3'- -ACGGCGCUG-CGG-CGGGCaCGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 2851 0.79 0.15236
Target:  5'- cGCuCGCGcCGUCGCCCGcUGCGGCuGCg -3'
miRNA:   3'- aCG-GCGCuGCGGCGGGC-ACGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 121877 0.79 0.15236
Target:  5'- cGCuCGCGcCGUCGCCCGcUGCGGCuGCg -3'
miRNA:   3'- aCG-GCGCuGCGGCGGGC-ACGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 52691 0.78 0.155779
Target:  5'- aGCCGCGGCggguuucGCCGCCCGcccccaaaagcGCGGCGGCu -3'
miRNA:   3'- aCGGCGCUG-------CGGCGGGCa----------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 57185 0.78 0.156163
Target:  5'- cUGCCGCcggcaaaGCGCCGCCCGUGCcauuauuGCuAGCa -3'
miRNA:   3'- -ACGGCGc------UGCGGCGGGCACGu------UG-UCG- -5'
24755 5' -60.7 NC_005264.1 + 59706 0.77 0.194424
Target:  5'- cGCCGCG-CGCCGCgCCG-GCGGCuaccGCg -3'
miRNA:   3'- aCGGCGCuGCGGCG-GGCaCGUUGu---CG- -5'
24755 5' -60.7 NC_005264.1 + 96227 0.77 0.194424
Target:  5'- gGCCGCGACGgCGCCg--GCAacGCGGCg -3'
miRNA:   3'- aCGGCGCUGCgGCGGgcaCGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 50261 0.77 0.199149
Target:  5'- cUGCCGCGGCggcgauuccgaGuuGCUCGUGCGuaGCGGCu -3'
miRNA:   3'- -ACGGCGCUG-----------CggCGGGCACGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 57460 0.77 0.203486
Target:  5'- aUGCCGUGAU-CCGCCUGUuuuccugGCGGCGGCg -3'
miRNA:   3'- -ACGGCGCUGcGGCGGGCA-------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 152753 0.77 0.203973
Target:  5'- gGCCGCGAUGCC-CCCG-GCGggagauuccgccGCGGCu -3'
miRNA:   3'- aCGGCGCUGCGGcGGGCaCGU------------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 46415 0.76 0.206916
Target:  5'- cGCCGCGAggcugcaCGCCGCCC-UGCGcucgacgucggccuGCGGCu -3'
miRNA:   3'- aCGGCGCU-------GCGGCGGGcACGU--------------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 38464 0.76 0.208898
Target:  5'- -uCCGCGAgGCCGCCCGggacgaGCGACcGCu -3'
miRNA:   3'- acGGCGCUgCGGCGGGCa-----CGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 69599 0.76 0.208898
Target:  5'- cGCCGacgagGGCGCCGCCCG-GCGugAGa -3'
miRNA:   3'- aCGGCg----CUGCGGCGGGCaCGUugUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.