miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 1538 0.67 0.641459
Target:  5'- -cCCGCGGCGuugaCCGCgCCG-GCAAUAGg -3'
miRNA:   3'- acGGCGCUGC----GGCG-GGCaCGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 2851 0.79 0.15236
Target:  5'- cGCuCGCGcCGUCGCCCGcUGCGGCuGCg -3'
miRNA:   3'- aCG-GCGCuGCGGCGGGC-ACGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 2882 0.69 0.533948
Target:  5'- cGaCCGgGGCGCgGCgCGgcggggaggGCGACGGCg -3'
miRNA:   3'- aC-GGCgCUGCGgCGgGCa--------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 3067 0.66 0.73856
Target:  5'- cGCUGUcuCGCCGCgaCUG-GCGGCGGCc -3'
miRNA:   3'- aCGGCGcuGCGGCG--GGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 3273 0.68 0.62171
Target:  5'- aGCCGCaGCGCCacgucCCUGgGCGACGGg -3'
miRNA:   3'- aCGGCGcUGCGGc----GGGCaCGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 3433 0.66 0.74793
Target:  5'- gGCCGCGcccGCGCUGCUC--GCAA-AGCg -3'
miRNA:   3'- aCGGCGC---UGCGGCGGGcaCGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 3979 0.67 0.690578
Target:  5'- aUGCUGUua-GCCGCuUCG-GCGGCGGCg -3'
miRNA:   3'- -ACGGCGcugCGGCG-GGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 4148 0.71 0.416408
Target:  5'- uUGUCGCGAugcuUGCCGCCCacGCcGCGGUg -3'
miRNA:   3'- -ACGGCGCU----GCGGCGGGcaCGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 5279 0.67 0.690578
Target:  5'- gGCCggacggcgggGCGGCgGCUGaCCCGUGgGGCGGg -3'
miRNA:   3'- aCGG----------CGCUG-CGGC-GGGCACgUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 5467 0.66 0.709963
Target:  5'- -aCCGCccCGCCGCCCa-GCAucACGGCc -3'
miRNA:   3'- acGGCGcuGCGGCGGGcaCGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 5953 0.68 0.611844
Target:  5'- -cCCGCGGCGuuGCCUGUugacGCA-CAGg -3'
miRNA:   3'- acGGCGCUGCggCGGGCA----CGUuGUCg -5'
24755 5' -60.7 NC_005264.1 + 6238 0.7 0.468829
Target:  5'- cGCCGCGAgacuUGCCGCCUccGUcGCGGUc -3'
miRNA:   3'- aCGGCGCU----GCGGCGGGcaCGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 6324 0.69 0.524428
Target:  5'- aGCCGCGA-GCC-CCCGUagcuguGCGAUAcGCg -3'
miRNA:   3'- aCGGCGCUgCGGcGGGCA------CGUUGU-CG- -5'
24755 5' -60.7 NC_005264.1 + 6378 0.69 0.543529
Target:  5'- -uCgGCGACcaGCCGCUCGUGCugcuccACGGCc -3'
miRNA:   3'- acGgCGCUG--CGGCGGGCACGu-----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 6437 0.67 0.668064
Target:  5'- cGCgGCGGCGUCGCUggcggagaacuccuCG-GCGgcGCGGCg -3'
miRNA:   3'- aCGgCGCUGCGGCGG--------------GCaCGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 6666 0.68 0.611844
Target:  5'- cGCCGCcACGCCGCaaagCCGcGCAuauGCg -3'
miRNA:   3'- aCGGCGcUGCGGCG----GGCaCGUuguCG- -5'
24755 5' -60.7 NC_005264.1 + 6986 0.66 0.74793
Target:  5'- gUGgCGCGGgGuuGUCCcUGCgGGCGGCg -3'
miRNA:   3'- -ACgGCGCUgCggCGGGcACG-UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 7401 0.66 0.729103
Target:  5'- gGCCcCGGCGCCGUCguccauugguuCGUGCGcCGGg -3'
miRNA:   3'- aCGGcGCUGCGGCGG-----------GCACGUuGUCg -5'
24755 5' -60.7 NC_005264.1 + 7929 0.66 0.74793
Target:  5'- cGCgCGCGuccacGCGUCGUCCacgGCcGCGGCg -3'
miRNA:   3'- aCG-GCGC-----UGCGGCGGGca-CGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 8319 0.67 0.677876
Target:  5'- cGCCGCGGCGUCG-CCGUcGUccccuaggguuugaGGgGGCg -3'
miRNA:   3'- aCGGCGCUGCGGCgGGCA-CG--------------UUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.