miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 162823 0.69 0.5522
Target:  5'- gGCCGCGGCGUuauggcgUGCCgGUGCGAa--- -3'
miRNA:   3'- aCGGCGCUGCG-------GCGGgCACGUUgucg -5'
24755 5' -60.7 NC_005264.1 + 162219 0.7 0.509333
Target:  5'- cUGCCuGCGACGCgGgCCG-GCGgggggggggggggcuACGGCg -3'
miRNA:   3'- -ACGG-CGCUGCGgCgGGCaCGU---------------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 161647 0.68 0.632572
Target:  5'- gGCCGCgGACGCCcgGUCCGcUGCGuaccccaucgcgcgcCGGCa -3'
miRNA:   3'- aCGGCG-CUGCGG--CGGGC-ACGUu--------------GUCG- -5'
24755 5' -60.7 NC_005264.1 + 159967 0.71 0.424897
Target:  5'- cGCCGCGccccggucgaucGCaGCCGCagCGgGCGACGGCg -3'
miRNA:   3'- aCGGCGC------------UG-CGGCGg-GCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 159931 0.66 0.700297
Target:  5'- aGCCaagcGUGACaaggGUgGCCCGUGCGguucGCAGUc -3'
miRNA:   3'- aCGG----CGCUG----CGgCGGGCACGU----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 159574 0.66 0.729103
Target:  5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3'
miRNA:   3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 159334 0.73 0.318872
Target:  5'- gGCgGaCGGCGaggauccccugccccCCGCCgCGUGCGGCGGCa -3'
miRNA:   3'- aCGgC-GCUGC---------------GGCGG-GCACGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 159302 0.66 0.700297
Target:  5'- aUGCUG-GACGCCGCCgCGUc--GCGGUu -3'
miRNA:   3'- -ACGGCgCUGCGGCGG-GCAcguUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 159170 0.7 0.477894
Target:  5'- cGCCGCcgaGACgGCCGCCCaucGUcgaGACGGCg -3'
miRNA:   3'- aCGGCG---CUG-CGGCGGGca-CG---UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 158755 1.1 0.001007
Target:  5'- gUGCCGCGACGCCGCCCGUGCAACAGCc -3'
miRNA:   3'- -ACGGCGCUGCGGCGGGCACGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 158493 0.68 0.59216
Target:  5'- aUGCUGCGACGCgCGCUCagccGcCAGgGGCa -3'
miRNA:   3'- -ACGGCGCUGCG-GCGGGca--C-GUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 158246 0.69 0.543529
Target:  5'- cGCCGCGGCGCUggcggggaggGCCUGcGUuccCGGCu -3'
miRNA:   3'- aCGGCGCUGCGG----------CGGGCaCGuu-GUCG- -5'
24755 5' -60.7 NC_005264.1 + 158106 0.72 0.360005
Target:  5'- -cCCG-GACGCCgGCUCGgcggGCAGCGGCg -3'
miRNA:   3'- acGGCgCUGCGG-CGGGCa---CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 157566 0.72 0.383516
Target:  5'- cGCCGCccCGCCGUCCGgccGCGACucGCc -3'
miRNA:   3'- aCGGCGcuGCGGCGGGCa--CGUUGu-CG- -5'
24755 5' -60.7 NC_005264.1 + 157491 0.76 0.208898
Target:  5'- -uCCGCGAgGCCGCCCGggacgaGCGACcGCu -3'
miRNA:   3'- acGGCGCUgCGGCGGGCa-----CGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 157436 0.68 0.59216
Target:  5'- aUGCCGCGuACGCCcugcugGCCCcugGCA--AGCa -3'
miRNA:   3'- -ACGGCGC-UGCGG------CGGGca-CGUugUCG- -5'
24755 5' -60.7 NC_005264.1 + 157203 0.68 0.625659
Target:  5'- cGCCGCGcuguggggacaccuaGCGUCGCgCGgccCGAUAGCg -3'
miRNA:   3'- aCGGCGC---------------UGCGGCGgGCac-GUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 157143 0.7 0.486126
Target:  5'- cGCCGCcaGGCGuuGCCCGcgcgcucUGUAcucgugggaacGCAGCa -3'
miRNA:   3'- aCGGCG--CUGCggCGGGC-------ACGU-----------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 156587 0.67 0.671011
Target:  5'- gGCgGCGACGaCCGCgaCGgagGCGgcaagucucGCGGCg -3'
miRNA:   3'- aCGgCGCUGC-GGCGg-GCa--CGU---------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 156409 0.73 0.344899
Target:  5'- cGCCaGCGACGCCGCC---GCGAgAGUg -3'
miRNA:   3'- aCGG-CGCUGCGGCGGgcaCGUUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.