Results 1 - 20 of 346 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24755 | 5' | -60.7 | NC_005264.1 | + | 117295 | 0.73 | 0.352395 |
Target: 5'- cGUgCGCGAUGCCGCUcuccgCGUGCGACugagaAGCg -3' miRNA: 3'- aCG-GCGCUGCGGCGG-----GCACGUUG-----UCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 157491 | 0.76 | 0.208898 |
Target: 5'- -uCCGCGAgGCCGCCCGggacgaGCGACcGCu -3' miRNA: 3'- acGGCGCUgCGGCGGGCa-----CGUUGuCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 149393 | 0.76 | 0.235084 |
Target: 5'- aGCCccuuCGGCGCCGCCgCGUcgcgucucgGCGGCGGCg -3' miRNA: 3'- aCGGc---GCUGCGGCGG-GCA---------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 46556 | 0.74 | 0.289101 |
Target: 5'- aGCCGUa--GCCGCCCGcGCcACGGCu -3' miRNA: 3'- aCGGCGcugCGGCGGGCaCGuUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 10074 | 0.74 | 0.295008 |
Target: 5'- aGCCGCGGCGgaaucucCCGCCgGggGCAucGCGGCc -3' miRNA: 3'- aCGGCGCUGC-------GGCGGgCa-CGU--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 159334 | 0.73 | 0.318872 |
Target: 5'- gGCgGaCGGCGaggauccccugccccCCGCCgCGUGCGGCGGCa -3' miRNA: 3'- aCGgC-GCUGC---------------GGCGG-GCACGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 30431 | 0.73 | 0.330254 |
Target: 5'- aGCCGCGGCuuGuaGCUCGUGCcuGCGGCc -3' miRNA: 3'- aCGGCGCUG--CggCGGGCACGu-UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 37272 | 0.73 | 0.344899 |
Target: 5'- gGgCGCGAUGCCGCCCauucagguuuaUGCGccGCAGCc -3' miRNA: 3'- aCgGCGCUGCGGCGGGc----------ACGU--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 156409 | 0.73 | 0.344899 |
Target: 5'- cGCCaGCGACGCCGCC---GCGAgAGUg -3' miRNA: 3'- aCGG-CGCUGCGGCGGgcaCGUUgUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 69599 | 0.76 | 0.208898 |
Target: 5'- cGCCGacgagGGCGCCGCCCG-GCGugAGa -3' miRNA: 3'- aCGGCg----CUGCGGCGGGCaCGUugUCg -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 46415 | 0.76 | 0.206916 |
Target: 5'- cGCCGCGAggcugcaCGCCGCCC-UGCGcucgacgucggccuGCGGCu -3' miRNA: 3'- aCGGCGCU-------GCGGCGGGcACGU--------------UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 57460 | 0.77 | 0.203486 |
Target: 5'- aUGCCGUGAU-CCGCCUGUuuuccugGCGGCGGCg -3' miRNA: 3'- -ACGGCGCUGcGGCGGGCA-------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 149882 | 0.87 | 0.043393 |
Target: 5'- gGCgGCGgcGCGCCGCCCGguagGCAACGGCg -3' miRNA: 3'- aCGgCGC--UGCGGCGGGCa---CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 70666 | 0.83 | 0.081859 |
Target: 5'- gGCCGCGGCGCCGCCggcaggcaauuuuuaCGcccgcggGCGACAGCg -3' miRNA: 3'- aCGGCGCUGCGGCGG---------------GCa------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 23754 | 0.8 | 0.115768 |
Target: 5'- aGCCGCGACGUCGUaauagGCGACAGCa -3' miRNA: 3'- aCGGCGCUGCGGCGggca-CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 60614 | 0.79 | 0.141449 |
Target: 5'- aUGCCGCGGCaGCCgGCUCGcGCAggaGCAGCa -3' miRNA: 3'- -ACGGCGCUG-CGG-CGGGCaCGU---UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 121877 | 0.79 | 0.15236 |
Target: 5'- cGCuCGCGcCGUCGCCCGcUGCGGCuGCg -3' miRNA: 3'- aCG-GCGCuGCGGCGGGC-ACGUUGuCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 52691 | 0.78 | 0.155779 |
Target: 5'- aGCCGCGGCggguuucGCCGCCCGcccccaaaagcGCGGCGGCu -3' miRNA: 3'- aCGGCGCUG-------CGGCGGGCa----------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 57185 | 0.78 | 0.156163 |
Target: 5'- cUGCCGCcggcaaaGCGCCGCCCGUGCcauuauuGCuAGCa -3' miRNA: 3'- -ACGGCGc------UGCGGCGGGCACGu------UG-UCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 59706 | 0.77 | 0.194424 |
Target: 5'- cGCCGCG-CGCCGCgCCG-GCGGCuaccGCg -3' miRNA: 3'- aCGGCGCuGCGGCG-GGCaCGUUGu---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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