miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 140092 0.66 0.74793
Target:  5'- cGCCGCuauCGCuuCGCCCa-GCAccggGCAGCa -3'
miRNA:   3'- aCGGCGcu-GCG--GCGGGcaCGU----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 12896 0.66 0.719568
Target:  5'- gGaCCGuCGA-GCCGCCCG-GCcucGCAGUc -3'
miRNA:   3'- aC-GGC-GCUgCGGCGGGCaCGu--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 103053 0.66 0.709963
Target:  5'- -uCCGCGGCGgacaCGgCCGUG-GACAGCc -3'
miRNA:   3'- acGGCGCUGCg---GCgGGCACgUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 39729 1.1 0.001007
Target:  5'- gUGCCGCGACGCCGCCCGUGCAACAGCc -3'
miRNA:   3'- -ACGGCGCUGCGGCGGGCACGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 3433 0.66 0.74793
Target:  5'- gGCCGCGcccGCGCUGCUC--GCAA-AGCg -3'
miRNA:   3'- aCGGCGC---UGCGGCGGGcaCGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 79399 0.66 0.73856
Target:  5'- cGCCGCgGGCGUgGCgaG-GCcGCGGCg -3'
miRNA:   3'- aCGGCG-CUGCGgCGggCaCGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 56400 0.66 0.73856
Target:  5'- cGCCucCGAaGCCGCUCGUGCAGgAu- -3'
miRNA:   3'- aCGGc-GCUgCGGCGGGCACGUUgUcg -5'
24755 5' -60.7 NC_005264.1 + 3067 0.66 0.73856
Target:  5'- cGCUGUcuCGCCGCgaCUG-GCGGCGGCc -3'
miRNA:   3'- aCGGCGcuGCGGCG--GGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 136335 0.66 0.729103
Target:  5'- cGCCGCGGCGUagaaGCUgGUuCGGCGccGCa -3'
miRNA:   3'- aCGGCGCUGCGg---CGGgCAcGUUGU--CG- -5'
24755 5' -60.7 NC_005264.1 + 16852 0.66 0.719568
Target:  5'- cGCCGUaGAgGCC-CUCGUugaccuugucgGCGGCGGCa -3'
miRNA:   3'- aCGGCG-CUgCGGcGGGCA-----------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 40547 0.66 0.729103
Target:  5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3'
miRNA:   3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 94897 0.66 0.735731
Target:  5'- aGCCGCaGGCGCCGggaacCCCGcuacacgacuuuuaUGCGGCcGUu -3'
miRNA:   3'- aCGGCG-CUGCGGC-----GGGC--------------ACGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 125749 0.66 0.74793
Target:  5'- cGCCGUccccgGAacUGCCGCCgCGUcGCuagaAACAGCc -3'
miRNA:   3'- aCGGCG-----CU--GCGGCGG-GCA-CG----UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 31271 0.66 0.729103
Target:  5'- cGCgGCGaACGCCcCCCGcuccuaccgGCuagauGCAGCg -3'
miRNA:   3'- aCGgCGC-UGCGGcGGGCa--------CGu----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 74741 0.66 0.74793
Target:  5'- cGCCGgcCGACGCUguGCCCGacGCGcACuGCu -3'
miRNA:   3'- aCGGC--GCUGCGG--CGGGCa-CGU-UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 110043 0.66 0.73856
Target:  5'- uUGCaGCGGCGCgGCaa--GCGACAGUa -3'
miRNA:   3'- -ACGgCGCUGCGgCGggcaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 36758 0.66 0.719568
Target:  5'- cGCCGgcCGGCGCCGUcgCCGcuUGCGcGCAGa -3'
miRNA:   3'- aCGGC--GCUGCGGCG--GGC--ACGU-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 89775 0.66 0.709963
Target:  5'- aUGCCGCG-CGggccauCCGUCCauGUGCAGCcaucccuuAGCg -3'
miRNA:   3'- -ACGGCGCuGC------GGCGGG--CACGUUG--------UCG- -5'
24755 5' -60.7 NC_005264.1 + 16095 0.66 0.74793
Target:  5'- uUGCCGgGucCGCCGCCCucGUuCGACccuaAGCu -3'
miRNA:   3'- -ACGGCgCu-GCGGCGGG--CAcGUUG----UCG- -5'
24755 5' -60.7 NC_005264.1 + 148571 0.66 0.73856
Target:  5'- gGcCCGCGACG-UGCCCGaggaacGCGcuACAGUa -3'
miRNA:   3'- aC-GGCGCUGCgGCGGGCa-----CGU--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.