miRNA display CGI


Results 21 - 40 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 8717 0.67 0.671011
Target:  5'- cGCgCGCGugGCCGCC---GUuuCGGCu -3'
miRNA:   3'- aCG-GCGCugCGGCGGgcaCGuuGUCG- -5'
24755 5' -60.7 NC_005264.1 + 10074 0.74 0.295008
Target:  5'- aGCCGCGGCGgaaucucCCGCCgGggGCAucGCGGCc -3'
miRNA:   3'- aCGGCGCUGC-------GGCGGgCa-CGU--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 10519 0.7 0.486126
Target:  5'- cGCCgagcggguccuguGCGGCGCCGCCCu--CAGgGGCg -3'
miRNA:   3'- aCGG-------------CGCUGCGGCGGGcacGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 10982 0.71 0.459853
Target:  5'- cGCCccccacGUGuCGCCGCCgGaGCGGCGGCc -3'
miRNA:   3'- aCGG------CGCuGCGGCGGgCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 11429 0.7 0.514973
Target:  5'- cGCgGCgGACGCCGgCCGccgGCAuccucgccagaACAGCc -3'
miRNA:   3'- aCGgCG-CUGCGGCgGGCa--CGU-----------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 12022 0.72 0.399746
Target:  5'- gGCgGCGAcCGCCGCCCuuagGCGA-AGCg -3'
miRNA:   3'- aCGgCGCU-GCGGCGGGca--CGUUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 12141 0.68 0.582355
Target:  5'- -uCCGcCGGCGCUGCCCGUuGCuGgGGUc -3'
miRNA:   3'- acGGC-GCUGCGGCGGGCA-CGuUgUCG- -5'
24755 5' -60.7 NC_005264.1 + 12640 0.71 0.463432
Target:  5'- -aCCGCGAgGCCGCCaauGUGgcuauuaaggccggcCGGCAGCa -3'
miRNA:   3'- acGGCGCUgCGGCGGg--CAC---------------GUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 12896 0.66 0.719568
Target:  5'- gGaCCGuCGA-GCCGCCCG-GCcucGCAGUc -3'
miRNA:   3'- aC-GGC-GCUgCGGCGGGCaCGu--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 12975 0.67 0.679834
Target:  5'- cGCCGCcgacgacGACGCgaGCCCGUucgaGCAcgaGGCg -3'
miRNA:   3'- aCGGCG-------CUGCGg-CGGGCA----CGUug-UCG- -5'
24755 5' -60.7 NC_005264.1 + 13391 0.66 0.719568
Target:  5'- cG-CGCGAcgaugaugacCGCCGucaaCCCGaGCAACAGCc -3'
miRNA:   3'- aCgGCGCU----------GCGGC----GGGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 13422 0.71 0.408024
Target:  5'- gGCgCGCGAcCGCCGCCgccgagacgCGacGCGGCGGCg -3'
miRNA:   3'- aCG-GCGCU-GCGGCGG---------GCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 13882 0.68 0.601991
Target:  5'- cUGCucuaCGCGuCGUCGCCUGcagGCGACGGg -3'
miRNA:   3'- -ACG----GCGCuGCGGCGGGCa--CGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 14336 0.69 0.533948
Target:  5'- cGCgGCGcuCGCCGCCaacGCGAcCAGCg -3'
miRNA:   3'- aCGgCGCu-GCGGCGGgcaCGUU-GUCG- -5'
24755 5' -60.7 NC_005264.1 + 16095 0.66 0.74793
Target:  5'- uUGCCGgGucCGCCGCCCucGUuCGACccuaAGCu -3'
miRNA:   3'- -ACGGCgCu-GCGGCGGG--CAcGUUG----UCG- -5'
24755 5' -60.7 NC_005264.1 + 16163 0.69 0.543529
Target:  5'- gGCgGCaAUGCCGCCC-UGCGcggaggucggucGCGGCa -3'
miRNA:   3'- aCGgCGcUGCGGCGGGcACGU------------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 16436 0.71 0.424897
Target:  5'- cUGCCGCGGgGCCuGCCCGcgggUGUGAacguggucgaacCAGCg -3'
miRNA:   3'- -ACGGCGCUgCGG-CGGGC----ACGUU------------GUCG- -5'
24755 5' -60.7 NC_005264.1 + 16562 0.69 0.553165
Target:  5'- cGCgGUgGGCGgCGCCgGgGCGGCGGCg -3'
miRNA:   3'- aCGgCG-CUGCgGCGGgCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 16852 0.66 0.719568
Target:  5'- cGCCGUaGAgGCC-CUCGUugaccuugucgGCGGCGGCa -3'
miRNA:   3'- aCGGCG-CUgCGGcGGGCA-----------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 17026 0.66 0.700297
Target:  5'- gGCgGCGAuCGUCGCCa--GCAgcGCGGCc -3'
miRNA:   3'- aCGgCGCU-GCGGCGGgcaCGU--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.