miRNA display CGI


Results 21 - 40 of 346 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 79399 0.66 0.73856
Target:  5'- cGCCGCgGGCGUgGCgaG-GCcGCGGCg -3'
miRNA:   3'- aCGGCG-CUGCGgCGggCaCGuUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 33852 0.66 0.737618
Target:  5'- cGCCGCGgcagagcugaagaACGuggagcguCCGCUCGagGCGGCGGUg -3'
miRNA:   3'- aCGGCGC-------------UGC--------GGCGGGCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 94897 0.66 0.735731
Target:  5'- aGCCGCaGGCGCCGggaacCCCGcuacacgacuuuuaUGCGGCcGUu -3'
miRNA:   3'- aCGGCG-CUGCGGC-----GGGC--------------ACGUUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 114739 0.66 0.735731
Target:  5'- aGCCGCGcgcgugcagaacccGCGCgGCCgCGguauUGCGcuaugaaaACAGCa -3'
miRNA:   3'- aCGGCGC--------------UGCGgCGG-GC----ACGU--------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 31271 0.66 0.729103
Target:  5'- cGCgGCGaACGCCcCCCGcuccuaccgGCuagauGCAGCg -3'
miRNA:   3'- aCGgCGC-UGCGGcGGGCa--------CGu----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 25553 0.66 0.729103
Target:  5'- cGcCCGCGuCGCCGCCaacGCcGCGGa -3'
miRNA:   3'- aC-GGCGCuGCGGCGGgcaCGuUGUCg -5'
24755 5' -60.7 NC_005264.1 + 136335 0.66 0.729103
Target:  5'- cGCCGCGGCGUagaaGCUgGUuCGGCGccGCa -3'
miRNA:   3'- aCGGCGCUGCGg---CGGgCAcGUUGU--CG- -5'
24755 5' -60.7 NC_005264.1 + 7401 0.66 0.729103
Target:  5'- gGCCcCGGCGCCGUCguccauugguuCGUGCGcCGGg -3'
miRNA:   3'- aCGGcGCUGCGGCGG-----------GCACGUuGUCg -5'
24755 5' -60.7 NC_005264.1 + 95441 0.66 0.729103
Target:  5'- aGCCGuCGugGaauacgcuaCCGCgCCG-GCGggcGCAGCg -3'
miRNA:   3'- aCGGC-GCugC---------GGCG-GGCaCGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 40547 0.66 0.729103
Target:  5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3'
miRNA:   3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 159574 0.66 0.729103
Target:  5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3'
miRNA:   3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 31168 0.66 0.729103
Target:  5'- aGCCGaCG-UGCCGCCaaCGgucugGCGGCGGg -3'
miRNA:   3'- aCGGC-GCuGCGGCGG--GCa----CGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 150298 0.66 0.729103
Target:  5'- cGCgGCGaACGCCcCCCGcuccuaccgGCuagauGCAGCg -3'
miRNA:   3'- aCGgCGC-UGCGGcGGGCa--------CGu----UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 135572 0.66 0.719568
Target:  5'- aGCCGCG-CGUCGCUCGcGacuACGGg -3'
miRNA:   3'- aCGGCGCuGCGGCGGGCaCgu-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 131922 0.66 0.719568
Target:  5'- gGaCCGuCGA-GCCGCCCG-GCcucGCAGUc -3'
miRNA:   3'- aC-GGC-GCUgCGGCGGGCaCGu--UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 155784 0.66 0.719568
Target:  5'- cGCCGgcCGGCGCCGUcgCCGcuUGCGcGCAGa -3'
miRNA:   3'- aCGGC--GCUGCGGCG--GGC--ACGU-UGUCg -5'
24755 5' -60.7 NC_005264.1 + 56079 0.66 0.719568
Target:  5'- cGcCCGCuGACGCCGCgucUUGUGCGuGCcGCa -3'
miRNA:   3'- aC-GGCG-CUGCGGCG---GGCACGU-UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 76657 0.66 0.719568
Target:  5'- gGCCGauGCgGCCaCCgGUGCGGCAGa -3'
miRNA:   3'- aCGGCgcUG-CGGcGGgCACGUUGUCg -5'
24755 5' -60.7 NC_005264.1 + 13391 0.66 0.719568
Target:  5'- cG-CGCGAcgaugaugacCGCCGucaaCCCGaGCAACAGCc -3'
miRNA:   3'- aCgGCGCU----------GCGGC----GGGCaCGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 42975 0.66 0.719568
Target:  5'- gGCaGUGACGCUaaGCUCGUcgagGCAuauGCAGCa -3'
miRNA:   3'- aCGgCGCUGCGG--CGGGCA----CGU---UGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.