Results 41 - 60 of 346 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24755 | 5' | -60.7 | NC_005264.1 | + | 36758 | 0.66 | 0.719568 |
Target: 5'- cGCCGgcCGGCGCCGUcgCCGcuUGCGcGCAGa -3' miRNA: 3'- aCGGC--GCUGCGGCG--GGC--ACGU-UGUCg -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 42975 | 0.66 | 0.719568 |
Target: 5'- gGCaGUGACGCUaaGCUCGUcgagGCAuauGCAGCa -3' miRNA: 3'- aCGgCGCUGCGG--CGGGCA----CGU---UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 16852 | 0.66 | 0.719568 |
Target: 5'- cGCCGUaGAgGCC-CUCGUugaccuugucgGCGGCGGCa -3' miRNA: 3'- aCGGCG-CUgCGGcGGGCA-----------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 104979 | 0.66 | 0.71861 |
Target: 5'- gUGCCGCcgucucuGGCGCUGacgaCCGUuuGCAGC-GCa -3' miRNA: 3'- -ACGGCG-------CUGCGGCg---GGCA--CGUUGuCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 112201 | 0.66 | 0.710927 |
Target: 5'- aGCCGCGAcuuggacguuacuaCGCCGCgguucgaguacgguaCCGc-CGACGGCa -3' miRNA: 3'- aCGGCGCU--------------GCGGCG---------------GGCacGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 65816 | 0.66 | 0.709963 |
Target: 5'- cGCgGCGAuuuuUGCCGCCucuuCGUGCuccgUAGCu -3' miRNA: 3'- aCGgCGCU----GCGGCGG----GCACGuu--GUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 124494 | 0.66 | 0.709963 |
Target: 5'- -aCCGCccCGCCGCCCa-GCAucACGGCc -3' miRNA: 3'- acGGCGcuGCGGCGGGcaCGU--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 89775 | 0.66 | 0.709963 |
Target: 5'- aUGCCGCG-CGggccauCCGUCCauGUGCAGCcaucccuuAGCg -3' miRNA: 3'- -ACGGCGCuGC------GGCGGG--CACGUUG--------UCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 104432 | 0.66 | 0.709963 |
Target: 5'- aGCCGcCGAUGUCGaaCGaGCAAUGGCc -3' miRNA: 3'- aCGGC-GCUGCGGCggGCaCGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 103053 | 0.66 | 0.709963 |
Target: 5'- -uCCGCGGCGgacaCGgCCGUG-GACAGCc -3' miRNA: 3'- acGGCGCUGCg---GCgGGCACgUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 5467 | 0.66 | 0.709963 |
Target: 5'- -aCCGCccCGCCGCCCa-GCAucACGGCc -3' miRNA: 3'- acGGCGcuGCGGCGGGcaCGU--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 150053 | 0.66 | 0.708999 |
Target: 5'- gGgCGaCGGUGCCGCCuagcgguCGUGCGGCuGCg -3' miRNA: 3'- aCgGC-GCUGCGGCGG-------GCACGUUGuCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 31026 | 0.66 | 0.708999 |
Target: 5'- gGgCGaCGGUGCCGCCuagcgguCGUGCGGCuGCg -3' miRNA: 3'- aCgGC-GCUGCGGCGG-------GCACGUUGuCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 118942 | 0.66 | 0.706104 |
Target: 5'- gGCCGCGcucaucgucuccgGCGCCcccuuugccgcGCUCGUuccgucucuuccccGCGGCAGCc -3' miRNA: 3'- aCGGCGC-------------UGCGG-----------CGGGCA--------------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 91521 | 0.66 | 0.700297 |
Target: 5'- aUGCCGCGcacuCGCCaaguucauGCUCGcGCAuaucgggcGCGGCg -3' miRNA: 3'- -ACGGCGCu---GCGG--------CGGGCaCGU--------UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 147369 | 0.66 | 0.700297 |
Target: 5'- cGCCGCGAuCGCCGCUUucGCGuCGucGCg -3' miRNA: 3'- aCGGCGCU-GCGGCGGGcaCGUuGU--CG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 17026 | 0.66 | 0.700297 |
Target: 5'- gGCgGCGAuCGUCGCCa--GCAgcGCGGCc -3' miRNA: 3'- aCGgCGCU-GCGGCGGgcaCGU--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 97434 | 0.66 | 0.700297 |
Target: 5'- cGCUGCgGGCGCCGCCgCGgaucUGauaGACguAGCg -3' miRNA: 3'- aCGGCG-CUGCGGCGG-GC----ACg--UUG--UCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 159302 | 0.66 | 0.700297 |
Target: 5'- aUGCUG-GACGCCGCCgCGUc--GCGGUu -3' miRNA: 3'- -ACGGCgCUGCGGCGG-GCAcguUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 151462 | 0.66 | 0.700297 |
Target: 5'- -uCCGCGACGCgGCCgCGUucuuccGCAagaacgacaggAUAGCg -3' miRNA: 3'- acGGCGCUGCGgCGG-GCA------CGU-----------UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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