miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 101174 0.71 0.627091
Target:  5'- cGAcCGAAcGGCCCUgagaacUGCCAGGGCCAa -3'
miRNA:   3'- -CUcGCUUuCUGGGA------GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 104814 0.69 0.718278
Target:  5'- cGAGCGGgcgccgcacGAcGGCCUgucCGCCGGGGCCGc -3'
miRNA:   3'- -CUCGCU---------UU-CUGGGa--GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 106747 0.66 0.883325
Target:  5'- -uGCGggGGAgccgccuguuuCCCUCGuCCuacGGCUAGa -3'
miRNA:   3'- cuCGCuuUCU-----------GGGAGC-GGuu-CCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 107149 0.66 0.86895
Target:  5'- cAGUGcccuGAGGgCCUCGCUGAGGUCGu -3'
miRNA:   3'- cUCGCu---UUCUgGGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 107791 0.66 0.888148
Target:  5'- uGAGCuccucGAGACCCUCGCUcucuacgcucaugaGGGGCUu- -3'
miRNA:   3'- -CUCGcu---UUCUGGGAGCGG--------------UUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 108228 0.68 0.77615
Target:  5'- -cGUGGccGAuguCCCgcacgCGCCGAGGCCGGc -3'
miRNA:   3'- cuCGCUuuCU---GGGa----GCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 110902 0.68 0.803474
Target:  5'- uAGCGGc--ACCCUCGCCAAgcucGGCgCGGa -3'
miRNA:   3'- cUCGCUuucUGGGAGCGGUU----CCG-GUC- -5'
24756 3' -56.7 NC_005264.1 + 116154 0.67 0.853726
Target:  5'- uGGCGAAccguuGGgUCUCGaCCAgugGGGCCAGg -3'
miRNA:   3'- cUCGCUUu----CUgGGAGC-GGU---UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 116799 0.66 0.876247
Target:  5'- aGGCGAuuGcGCCCUgGCaucGGCCAGc -3'
miRNA:   3'- cUCGCUuuC-UGGGAgCGguuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 118624 0.67 0.845811
Target:  5'- --cCGAAAGcuCCCUCGCC--GGCCAa -3'
miRNA:   3'- cucGCUUUCu-GGGAGCGGuuCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 120309 0.68 0.757277
Target:  5'- -cGCGGAAGcugcGCCCaCGCCAcacaucAGGCCAc -3'
miRNA:   3'- cuCGCUUUC----UGGGaGCGGU------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 121813 0.69 0.728161
Target:  5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3'
miRNA:   3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 122073 0.67 0.826881
Target:  5'- -cGCGGAAGAUgUaggggacauaacauUUGCCGAGGCCGu -3'
miRNA:   3'- cuCGCUUUCUGgG--------------AGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 122532 0.67 0.82093
Target:  5'- gGGGCaGGGGAUCCUCGCCGuccGCCu- -3'
miRNA:   3'- -CUCGcUUUCUGGGAGCGGUuc-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 126312 0.66 0.87408
Target:  5'- -cGCGGccGAUggcuccugcgcccgCCUCGUCGAGGCCGc -3'
miRNA:   3'- cuCGCUuuCUG--------------GGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 128084 0.66 0.890182
Target:  5'- uAGCGuuGAGGACCCgacgCGCUGAGGaCgAGc -3'
miRNA:   3'- cUCGC--UUUCUGGGa---GCGGUUCC-GgUC- -5'
24756 3' -56.7 NC_005264.1 + 130968 0.66 0.890182
Target:  5'- gGGGUGAAAGuCCaCUUGCCugacGAGGUCGc -3'
miRNA:   3'- -CUCGCUUUCuGG-GAGCGG----UUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 131157 0.66 0.876247
Target:  5'- uGGCGGGcaGCCC-CGCCGAGaGCCc- -3'
miRNA:   3'- cUCGCUUucUGGGaGCGGUUC-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 132901 0.66 0.86672
Target:  5'- uGAGCGAAGGcuGCCCUgCGUUaauggacaacgcauGAGGCUGGc -3'
miRNA:   3'- -CUCGCUUUC--UGGGA-GCGG--------------UUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 134930 0.7 0.64754
Target:  5'- -cGCGGucGucgucgcucACCCUCGCCGAgacgcuGGCCAGa -3'
miRNA:   3'- cuCGCUuuC---------UGGGAGCGGUU------CCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.