miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 46376 0.71 0.616868
Target:  5'- -cGCGcAGGACaCCgauacgcgggUCGUCAGGGCCAGg -3'
miRNA:   3'- cuCGCuUUCUG-GG----------AGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 47312 0.66 0.883325
Target:  5'- cAGCGggGaacuGCCCgCGUCGAGGCguGg -3'
miRNA:   3'- cUCGCuuUc---UGGGaGCGGUUCCGguC- -5'
24756 3' -56.7 NC_005264.1 + 47719 0.68 0.785399
Target:  5'- uGGCGGGAGGauagUCUaGCCAGGGCCAc -3'
miRNA:   3'- cUCGCUUUCUg---GGAgCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 58328 0.67 0.851372
Target:  5'- -cGCGAAGGGgaacaaauucCCCUCGCCccugucguacucugGcgGGGCCGGc -3'
miRNA:   3'- cuCGCUUUCU----------GGGAGCGG--------------U--UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 63083 0.67 0.82093
Target:  5'- cGGCG-AGGGCCgUCGCggaAAGGCCu- -3'
miRNA:   3'- cUCGCuUUCUGGgAGCGg--UUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 64360 0.68 0.766773
Target:  5'- uGAG-GAGAuGCCCUCGCgCGugccGGCCGGg -3'
miRNA:   3'- -CUCgCUUUcUGGGAGCG-GUu---CCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 64937 0.73 0.51642
Target:  5'- aAGCGAGAG-CCUUCG-CGAGGCCGc -3'
miRNA:   3'- cUCGCUUUCuGGGAGCgGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 66236 0.74 0.423171
Target:  5'- uGGCGAGcugcGGGCCuagcauCUCuGCCAGGGCCAGa -3'
miRNA:   3'- cUCGCUU----UCUGG------GAG-CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 71336 0.66 0.883325
Target:  5'- -cGUGAAAGACUCguUCaugaacgagauaGCCgGAGGCCAGg -3'
miRNA:   3'- cuCGCUUUCUGGG--AG------------CGG-UUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 72322 0.71 0.627091
Target:  5'- uGGCGGuuuGGCCUUCGUCGAuGGCCGa -3'
miRNA:   3'- cUCGCUuu-CUGGGAGCGGUU-CCGGUc -5'
24756 3' -56.7 NC_005264.1 + 75707 0.67 0.82093
Target:  5'- cGGCGcGAAGAcuggugcgcCCCgcgggCGCCGgAGGCCAGu -3'
miRNA:   3'- cUCGC-UUUCU---------GGGa----GCGGU-UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 80475 0.67 0.853726
Target:  5'- -uGCGAAGuGCuCCgcuucgcCGCCAAGGCCGa -3'
miRNA:   3'- cuCGCUUUcUG-GGa------GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 87697 0.71 0.596465
Target:  5'- uGGCGu--GGCCCUCguggauGCCGAGGCCu- -3'
miRNA:   3'- cUCGCuuuCUGGGAG------CGGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 91400 0.73 0.51642
Target:  5'- aGAGUGGuuGGCCCUagCGCCGGGGCa-- -3'
miRNA:   3'- -CUCGCUuuCUGGGA--GCGGUUCCGguc -5'
24756 3' -56.7 NC_005264.1 + 92555 0.67 0.837701
Target:  5'- gGAGUGggGGAaguugcgggaCUCGaCCGAGGCCu- -3'
miRNA:   3'- -CUCGCuuUCUgg--------GAGC-GGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 97658 0.7 0.6781
Target:  5'- cGGCGaAAAGGCCgCg-GCCAuGGCCAGa -3'
miRNA:   3'- cUCGC-UUUCUGG-GagCGGUuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 98151 0.66 0.86895
Target:  5'- cGGGCGAGcacGGCCUgccCGCCGgcAGGCCc- -3'
miRNA:   3'- -CUCGCUUu--CUGGGa--GCGGU--UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 99538 0.67 0.853726
Target:  5'- aGGCGGGAGuccgcauCCCcCGaCUggGGCCGGu -3'
miRNA:   3'- cUCGCUUUCu------GGGaGC-GGuuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 99765 0.71 0.637318
Target:  5'- -cGCGAc-GGCCCUCGCCGAG-CUGGa -3'
miRNA:   3'- cuCGCUuuCUGGGAGCGGUUCcGGUC- -5'
24756 3' -56.7 NC_005264.1 + 100509 0.68 0.79451
Target:  5'- cGGGCGAAAG-CCCUCauagacgaCAGGGCgGGu -3'
miRNA:   3'- -CUCGCUUUCuGGGAGcg------GUUCCGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.