miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 2787 0.69 0.728161
Target:  5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3'
miRNA:   3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 3505 0.67 0.82093
Target:  5'- gGGGCaGGGGAUCCUCGCCGuccGCCu- -3'
miRNA:   3'- -CUCGcUUUCUGGGAGCGGUuc-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 9057 0.66 0.890182
Target:  5'- uAGCGuuGAGGACCCgacgCGCUGAGGaCgAGc -3'
miRNA:   3'- cUCGC--UUUCUGGGa---GCGGUUCC-GgUC- -5'
24756 3' -56.7 NC_005264.1 + 11942 0.66 0.890182
Target:  5'- gGGGUGAAAGuCCaCUUGCCugacGAGGUCGc -3'
miRNA:   3'- -CUCGCUUUCuGG-GAGCGG----UUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 12130 0.66 0.876247
Target:  5'- uGGCGGGcaGCCC-CGCCGAGaGCCc- -3'
miRNA:   3'- cUCGCUUucUGGGaGCGGUUC-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 14846 0.66 0.861442
Target:  5'- -cGCGAGaaguucgugcAGAggCUUGCCAGGGCCAu -3'
miRNA:   3'- cuCGCUU----------UCUggGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 17810 0.7 0.66794
Target:  5'- uGGCGguAGGCCCUgGCCAcGGCa-- -3'
miRNA:   3'- cUCGCuuUCUGGGAgCGGUuCCGguc -5'
24756 3' -56.7 NC_005264.1 + 18290 0.68 0.79451
Target:  5'- uAGCGGGAGAUCUccgucgucgUUGCgCGAGGCCGu -3'
miRNA:   3'- cUCGCUUUCUGGG---------AGCG-GUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 21311 0.68 0.78448
Target:  5'- uGGCGGAcuuauGGgugcaguuguggcGCCCguagaugCGCCGGGGCCGGa -3'
miRNA:   3'- cUCGCUU-----UC-------------UGGGa------GCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 25289 0.7 0.688223
Target:  5'- uGGGUGugguguGACCUaccacgUCGCCGAGGCCGa -3'
miRNA:   3'- -CUCGCuuu---CUGGG------AGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 29468 0.7 0.6781
Target:  5'- -cGCGAu-GACUCUCGCCGagucgucgaggaGGGCCGc -3'
miRNA:   3'- cuCGCUuuCUGGGAGCGGU------------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 29515 0.67 0.829405
Target:  5'- -uGCGAAAGACCCgccaucUCGCCAccGUCu- -3'
miRNA:   3'- cuCGCUUUCUGGG------AGCGGUucCGGuc -5'
24756 3' -56.7 NC_005264.1 + 31674 0.68 0.757277
Target:  5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3'
miRNA:   3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 34969 0.67 0.853726
Target:  5'- cGGCGAcgGAGACCCcauucgcgCGCCGGGuucuagaccGCCGGc -3'
miRNA:   3'- cUCGCU--UUCUGGGa-------GCGGUUC---------CGGUC- -5'
24756 3' -56.7 NC_005264.1 + 35923 0.66 0.861442
Target:  5'- cGGCGAGAGACCUccgaCGCCGcaucugGGGCg-- -3'
miRNA:   3'- cUCGCUUUCUGGGa---GCGGU------UCCGguc -5'
24756 3' -56.7 NC_005264.1 + 38293 0.66 0.867465
Target:  5'- cGGCGAcguucguuacGCCUUCGCgGAGGCCGa -3'
miRNA:   3'- cUCGCUuuc-------UGGGAGCGgUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 39005 0.66 0.892194
Target:  5'- aGAGCGAcgacggauggaccAGGGCgUUCGCCAAcgacccagucggacuGGCCGa -3'
miRNA:   3'- -CUCGCU-------------UUCUGgGAGCGGUU---------------CCGGUc -5'
24756 3' -56.7 NC_005264.1 + 40470 1.08 0.002952
Target:  5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3'
miRNA:   3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 40985 0.66 0.876247
Target:  5'- -cGCGAccGGCCCUCcGCCAacccguuuagguGGGCUc- -3'
miRNA:   3'- cuCGCUuuCUGGGAG-CGGU------------UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 41443 0.69 0.728161
Target:  5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3'
miRNA:   3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.