miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 14846 0.66 0.861442
Target:  5'- -cGCGAGaaguucgugcAGAggCUUGCCAGGGCCAu -3'
miRNA:   3'- cuCGCUU----------UCUggGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 150700 0.68 0.757277
Target:  5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3'
miRNA:   3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 47719 0.68 0.785399
Target:  5'- uGGCGGGAGGauagUCUaGCCAGGGCCAc -3'
miRNA:   3'- cUCGCUUUCUg---GGAgCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 63083 0.67 0.82093
Target:  5'- cGGCG-AGGGCCgUCGCggaAAGGCCu- -3'
miRNA:   3'- cUCGCuUUCUGGgAGCGg--UUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 75707 0.67 0.82093
Target:  5'- cGGCGcGAAGAcuggugcgcCCCgcgggCGCCGgAGGCCAGu -3'
miRNA:   3'- cUCGC-UUUCU---------GGGa----GCGGU-UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 122532 0.67 0.82093
Target:  5'- gGGGCaGGGGAUCCUCGCCGuccGCCu- -3'
miRNA:   3'- -CUCGcUUUCUGGGAGCGGUuc-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 58328 0.67 0.851372
Target:  5'- -cGCGAAGGGgaacaaauucCCCUCGCCccugucguacucugGcgGGGCCGGc -3'
miRNA:   3'- cuCGCUUUCU----------GGGAGCGG--------------U--UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 116154 0.67 0.853726
Target:  5'- uGGCGAAccguuGGgUCUCGaCCAgugGGGCCAGg -3'
miRNA:   3'- cUCGCUUu----CUgGGAGC-GGU---UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 34969 0.67 0.853726
Target:  5'- cGGCGAcgGAGACCCcauucgcgCGCCGGGuucuagaccGCCGGc -3'
miRNA:   3'- cUCGCU--UUCUGGGa-------GCGGUUC---------CGGUC- -5'
24756 3' -56.7 NC_005264.1 + 160470 0.69 0.728161
Target:  5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3'
miRNA:   3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 121813 0.69 0.728161
Target:  5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3'
miRNA:   3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 136438 0.69 0.708321
Target:  5'- aGGCGGAAGAgCaugggCGCUGAGGCCGc -3'
miRNA:   3'- cUCGCUUUCUgGga---GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 136686 0.75 0.414404
Target:  5'- -cGCGAAAG-UCCUCGCCGcGGCCuGg -3'
miRNA:   3'- cuCGCUUUCuGGGAGCGGUuCCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 66236 0.74 0.423171
Target:  5'- uGGCGAGcugcGGGCCuagcauCUCuGCCAGGGCCAGa -3'
miRNA:   3'- cUCGCUU----UCUGG------GAG-CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 87697 0.71 0.596465
Target:  5'- uGGCGu--GGCCCUCguggauGCCGAGGCCu- -3'
miRNA:   3'- cUCGCuuuCUGGGAG------CGGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 46376 0.71 0.616868
Target:  5'- -cGCGcAGGACaCCgauacgcgggUCGUCAGGGCCAGg -3'
miRNA:   3'- cuCGCuUUCUG-GG----------AGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 101174 0.71 0.627091
Target:  5'- cGAcCGAAcGGCCCUgagaacUGCCAGGGCCAa -3'
miRNA:   3'- -CUcGCUUuCUGGGA------GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 17810 0.7 0.66794
Target:  5'- uGGCGguAGGCCCUgGCCAcGGCa-- -3'
miRNA:   3'- cUCGCuuUCUGGGAgCGGUuCCGguc -5'
24756 3' -56.7 NC_005264.1 + 29468 0.7 0.6781
Target:  5'- -cGCGAu-GACUCUCGCCGagucgucgaggaGGGCCGc -3'
miRNA:   3'- cuCGCUuuCUGGGAGCGGU------------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 25289 0.7 0.688223
Target:  5'- uGGGUGugguguGACCUaccacgUCGCCGAGGCCGa -3'
miRNA:   3'- -CUCGCuuu---CUGGG------AGCGGUUCCGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.