Results 1 - 20 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 39005 | 0.66 | 0.892194 |
Target: 5'- aGAGCGAcgacggauggaccAGGGCgUUCGCCAAcgacccagucggacuGGCCGa -3' miRNA: 3'- -CUCGCU-------------UUCUGgGAGCGGUU---------------CCGGUc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 80475 | 0.67 | 0.853726 |
Target: 5'- -uGCGAAGuGCuCCgcuucgcCGCCAAGGCCGa -3' miRNA: 3'- cuCGCUUUcUG-GGa------GCGGUUCCGGUc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 118624 | 0.67 | 0.845811 |
Target: 5'- --cCGAAAGcuCCCUCGCC--GGCCAa -3' miRNA: 3'- cucGCUUUCu-GGGAGCGGuuCCGGUc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 40470 | 1.08 | 0.002952 |
Target: 5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3' miRNA: 3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 71336 | 0.66 | 0.883325 |
Target: 5'- -cGUGAAAGACUCguUCaugaacgagauaGCCgGAGGCCAGg -3' miRNA: 3'- cuCGCUUUCUGGG--AG------------CGG-UUCCGGUC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 47312 | 0.66 | 0.883325 |
Target: 5'- cAGCGggGaacuGCCCgCGUCGAGGCguGg -3' miRNA: 3'- cUCGCuuUc---UGGGaGCGGUUCCGguC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 40985 | 0.66 | 0.876247 |
Target: 5'- -cGCGAccGGCCCUCcGCCAacccguuuagguGGGCUc- -3' miRNA: 3'- cuCGCUuuCUGGGAG-CGGU------------UCCGGuc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 12130 | 0.66 | 0.876247 |
Target: 5'- uGGCGGGcaGCCC-CGCCGAGaGCCc- -3' miRNA: 3'- cUCGCUUucUGGGaGCGGUUC-CGGuc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 98151 | 0.66 | 0.86895 |
Target: 5'- cGGGCGAGcacGGCCUgccCGCCGgcAGGCCc- -3' miRNA: 3'- -CUCGCUUu--CUGGGa--GCGGU--UCCGGuc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 99538 | 0.67 | 0.853726 |
Target: 5'- aGGCGGGAGuccgcauCCCcCGaCUggGGCCGGu -3' miRNA: 3'- cUCGCUUUCu------GGGaGC-GGuuCCGGUC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 35923 | 0.66 | 0.861442 |
Target: 5'- cGGCGAGAGACCUccgaCGCCGcaucugGGGCg-- -3' miRNA: 3'- cUCGCUUUCUGGGa---GCGGU------UCCGguc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 107149 | 0.66 | 0.86895 |
Target: 5'- cAGUGcccuGAGGgCCUCGCUGAGGUCGu -3' miRNA: 3'- cUCGCu---UUCUgGGAGCGGUUCCGGUc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 158998 | 0.66 | 0.890182 |
Target: 5'- cGGCGcAGGACCCaUGCCAGGaG-CAGg -3' miRNA: 3'- cUCGCuUUCUGGGaGCGGUUC-CgGUC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 141763 | 0.67 | 0.854507 |
Target: 5'- aGGCGAGcacggcauauggcuuGGCCaacgCGCUAAGGCCGGc -3' miRNA: 3'- cUCGCUUu--------------CUGGga--GCGGUUCCGGUC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 11942 | 0.66 | 0.890182 |
Target: 5'- gGGGUGAAAGuCCaCUUGCCugacGAGGUCGc -3' miRNA: 3'- -CUCGCUUUCuGG-GAGCGG----UUCCGGUc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 126312 | 0.66 | 0.87408 |
Target: 5'- -cGCGGccGAUggcuccugcgcccgCCUCGUCGAGGCCGc -3' miRNA: 3'- cuCGCUuuCUG--------------GGAGCGGUUCCGGUc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 141464 | 0.67 | 0.853726 |
Target: 5'- cGAGCGgcGGGgCCUCuuuccaccgGCCGAGGCg-- -3' miRNA: 3'- -CUCGCuuUCUgGGAG---------CGGUUCCGguc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 152767 | 0.67 | 0.845811 |
Target: 5'- cGGCGGGAGAUUC-CGCCGcGGCUg- -3' miRNA: 3'- cUCGCUUUCUGGGaGCGGUuCCGGuc -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 9057 | 0.66 | 0.890182 |
Target: 5'- uAGCGuuGAGGACCCgacgCGCUGAGGaCgAGc -3' miRNA: 3'- cUCGC--UUUCUGGGa---GCGGUUCC-GgUC- -5' |
|||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 116799 | 0.66 | 0.876247 |
Target: 5'- aGGCGAuuGcGCCCUgGCaucGGCCAGc -3' miRNA: 3'- cUCGCUuuC-UGGGAgCGguuCCGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home