miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 159497 1.08 0.002952
Target:  5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3'
miRNA:   3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 40470 1.08 0.002952
Target:  5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3'
miRNA:   3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 136686 0.75 0.414404
Target:  5'- -cGCGAAAG-UCCUCGCCGcGGCCuGg -3'
miRNA:   3'- cuCGCUUUCuGGGAGCGGUuCCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 66236 0.74 0.423171
Target:  5'- uGGCGAGcugcGGGCCuagcauCUCuGCCAGGGCCAGa -3'
miRNA:   3'- cUCGCUU----UCUGG------GAG-CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 91400 0.73 0.51642
Target:  5'- aGAGUGGuuGGCCCUagCGCCGGGGCa-- -3'
miRNA:   3'- -CUCGCUuuCUGGGA--GCGGUUCCGguc -5'
24756 3' -56.7 NC_005264.1 + 64937 0.73 0.51642
Target:  5'- aAGCGAGAG-CCUUCG-CGAGGCCGc -3'
miRNA:   3'- cUCGCUUUCuGGGAGCgGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 144422 0.71 0.596465
Target:  5'- cGAGCGAGAGggcGCgCCUgCGCC--GGCCGGa -3'
miRNA:   3'- -CUCGCUUUC---UG-GGA-GCGGuuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 87697 0.71 0.596465
Target:  5'- uGGCGu--GGCCCUCguggauGCCGAGGCCu- -3'
miRNA:   3'- cUCGCuuuCUGGGAG------CGGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 46376 0.71 0.616868
Target:  5'- -cGCGcAGGACaCCgauacgcgggUCGUCAGGGCCAGg -3'
miRNA:   3'- cuCGCuUUCUG-GG----------AGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 101174 0.71 0.627091
Target:  5'- cGAcCGAAcGGCCCUgagaacUGCCAGGGCCAa -3'
miRNA:   3'- -CUcGCUUuCUGGGA------GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 72322 0.71 0.627091
Target:  5'- uGGCGGuuuGGCCUUCGUCGAuGGCCGa -3'
miRNA:   3'- cUCGCUuu-CUGGGAGCGGUU-CCGGUc -5'
24756 3' -56.7 NC_005264.1 + 99765 0.71 0.637318
Target:  5'- -cGCGAc-GGCCCUCGCCGAG-CUGGa -3'
miRNA:   3'- cuCGCUuuCUGGGAGCGGUUCcGGUC- -5'
24756 3' -56.7 NC_005264.1 + 134930 0.7 0.64754
Target:  5'- -cGCGGucGucgucgcucACCCUCGCCGAgacgcuGGCCAGa -3'
miRNA:   3'- cuCGCUuuC---------UGGGAGCGGUU------CCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 155564 0.7 0.66794
Target:  5'- uGGCGggGcucuCCgUCGCCAAGGCUAc -3'
miRNA:   3'- cUCGCuuUcu--GGgAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 17810 0.7 0.66794
Target:  5'- uGGCGguAGGCCCUgGCCAcGGCa-- -3'
miRNA:   3'- cUCGCuuUCUGGGAgCGGUuCCGguc -5'
24756 3' -56.7 NC_005264.1 + 29468 0.7 0.6781
Target:  5'- -cGCGAu-GACUCUCGCCGagucgucgaggaGGGCCGc -3'
miRNA:   3'- cuCGCUuuCUGGGAGCGGU------------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 97658 0.7 0.6781
Target:  5'- cGGCGaAAAGGCCgCg-GCCAuGGCCAGa -3'
miRNA:   3'- cUCGC-UUUCUGG-GagCGGUuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 25289 0.7 0.688223
Target:  5'- uGGGUGugguguGACCUaccacgUCGCCGAGGCCGa -3'
miRNA:   3'- -CUCGCuuu---CUGGG------AGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 158795 0.7 0.6983
Target:  5'- aAGaGGAGGACCaauuauUCGCCGAGGCCu- -3'
miRNA:   3'- cUCgCUUUCUGGg-----AGCGGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 136438 0.69 0.708321
Target:  5'- aGGCGGAAGAgCaugggCGCUGAGGCCGc -3'
miRNA:   3'- cUCGCUUUCUgGga---GCGGUUCCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.