miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 104814 0.69 0.718278
Target:  5'- cGAGCGGgcgccgcacGAcGGCCUgucCGCCGGGGCCGc -3'
miRNA:   3'- -CUCGCU---------UU-CUGGGa--GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 121813 0.69 0.728161
Target:  5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3'
miRNA:   3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 160470 0.69 0.728161
Target:  5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3'
miRNA:   3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 41443 0.69 0.728161
Target:  5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3'
miRNA:   3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 2787 0.69 0.728161
Target:  5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3'
miRNA:   3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 31674 0.68 0.757277
Target:  5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3'
miRNA:   3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 120309 0.68 0.757277
Target:  5'- -cGCGGAAGcugcGCCCaCGCCAcacaucAGGCCAc -3'
miRNA:   3'- cuCGCUUUC----UGGGaGCGGU------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 150700 0.68 0.757277
Target:  5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3'
miRNA:   3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 150124 0.68 0.757277
Target:  5'- uGGGCGGAgcaugucagaGGGCCCgcgcaCGCCAaaacaaucaGGGCCAc -3'
miRNA:   3'- -CUCGCUU----------UCUGGGa----GCGGU---------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 64360 0.68 0.766773
Target:  5'- uGAG-GAGAuGCCCUCGCgCGugccGGCCGGg -3'
miRNA:   3'- -CUCgCUUUcUGGGAGCG-GUu---CCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 108228 0.68 0.77615
Target:  5'- -cGUGGccGAuguCCCgcacgCGCCGAGGCCGGc -3'
miRNA:   3'- cuCGCUuuCU---GGGa----GCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 21311 0.68 0.78448
Target:  5'- uGGCGGAcuuauGGgugcaguuguggcGCCCguagaugCGCCGGGGCCGGa -3'
miRNA:   3'- cUCGCUU-----UC-------------UGGGa------GCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 47719 0.68 0.785399
Target:  5'- uGGCGGGAGGauagUCUaGCCAGGGCCAc -3'
miRNA:   3'- cUCGCUUUCUg---GGAgCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 140173 0.68 0.79451
Target:  5'- aGAGCGGcGAGACgCUCGuCCuucguGGGCCu- -3'
miRNA:   3'- -CUCGCU-UUCUGgGAGC-GGu----UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 18290 0.68 0.79451
Target:  5'- uAGCGGGAGAUCUccgucgucgUUGCgCGAGGCCGu -3'
miRNA:   3'- cUCGCUUUCUGGG---------AGCG-GUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 152670 0.68 0.79451
Target:  5'- cGA-CGAcAAGAUaCUCGCCGAGGCCuGg -3'
miRNA:   3'- -CUcGCU-UUCUGgGAGCGGUUCCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 100509 0.68 0.79451
Target:  5'- cGGGCGAAAG-CCCUCauagacgaCAGGGCgGGu -3'
miRNA:   3'- -CUCGCUUUCuGGGAGcg------GUUCCGgUC- -5'
24756 3' -56.7 NC_005264.1 + 110902 0.68 0.803474
Target:  5'- uAGCGGc--ACCCUCGCCAAgcucGGCgCGGa -3'
miRNA:   3'- cUCGCUuucUGGGAGCGGUU----CCG-GUC- -5'
24756 3' -56.7 NC_005264.1 + 75707 0.67 0.82093
Target:  5'- cGGCGcGAAGAcuggugcgcCCCgcgggCGCCGgAGGCCAGu -3'
miRNA:   3'- cUCGC-UUUCU---------GGGa----GCGGU-UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 3505 0.67 0.82093
Target:  5'- gGGGCaGGGGAUCCUCGCCGuccGCCu- -3'
miRNA:   3'- -CUCGcUUUCUGGGAGCGGUuc-CGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.