miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 157320 0.66 0.867465
Target:  5'- cGGCGAcguucguuacGCCUUCGCgGAGGCCGa -3'
miRNA:   3'- cUCGCUuuc-------UGGGAGCGgUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 132901 0.66 0.86672
Target:  5'- uGAGCGAAGGcuGCCCUgCGUUaauggacaacgcauGAGGCUGGc -3'
miRNA:   3'- -CUCGCUUUC--UGGGA-GCGG--------------UUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 144831 0.66 0.861442
Target:  5'- -cGCGGccGACCCgcCGCCGucAGaGCCGGu -3'
miRNA:   3'- cuCGCUuuCUGGGa-GCGGU--UC-CGGUC- -5'
24756 3' -56.7 NC_005264.1 + 35923 0.66 0.861442
Target:  5'- cGGCGAGAGACCUccgaCGCCGcaucugGGGCg-- -3'
miRNA:   3'- cUCGCUUUCUGGGa---GCGGU------UCCGguc -5'
24756 3' -56.7 NC_005264.1 + 14846 0.66 0.861442
Target:  5'- -cGCGAGaaguucgugcAGAggCUUGCCAGGGCCAu -3'
miRNA:   3'- cuCGCUU----------UCUggGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 141763 0.67 0.854507
Target:  5'- aGGCGAGcacggcauauggcuuGGCCaacgCGCUAAGGCCGGc -3'
miRNA:   3'- cUCGCUUu--------------CUGGga--GCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 34969 0.67 0.853726
Target:  5'- cGGCGAcgGAGACCCcauucgcgCGCCGGGuucuagaccGCCGGc -3'
miRNA:   3'- cUCGCU--UUCUGGGa-------GCGGUUC---------CGGUC- -5'
24756 3' -56.7 NC_005264.1 + 141464 0.67 0.853726
Target:  5'- cGAGCGgcGGGgCCUCuuuccaccgGCCGAGGCg-- -3'
miRNA:   3'- -CUCGCuuUCUgGGAG---------CGGUUCCGguc -5'
24756 3' -56.7 NC_005264.1 + 80475 0.67 0.853726
Target:  5'- -uGCGAAGuGCuCCgcuucgcCGCCAAGGCCGa -3'
miRNA:   3'- cuCGCUUUcUG-GGa------GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 99538 0.67 0.853726
Target:  5'- aGGCGGGAGuccgcauCCCcCGaCUggGGCCGGu -3'
miRNA:   3'- cUCGCUUUCu------GGGaGC-GGuuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 116154 0.67 0.853726
Target:  5'- uGGCGAAccguuGGgUCUCGaCCAgugGGGCCAGg -3'
miRNA:   3'- cUCGCUUu----CUgGGAGC-GGU---UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 58328 0.67 0.851372
Target:  5'- -cGCGAAGGGgaacaaauucCCCUCGCCccugucguacucugGcgGGGCCGGc -3'
miRNA:   3'- cuCGCUUUCU----------GGGAGCGG--------------U--UCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 152767 0.67 0.845811
Target:  5'- cGGCGGGAGAUUC-CGCCGcGGCUg- -3'
miRNA:   3'- cUCGCUUUCUGGGaGCGGUuCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 118624 0.67 0.845811
Target:  5'- --cCGAAAGcuCCCUCGCC--GGCCAa -3'
miRNA:   3'- cucGCUUUCu-GGGAGCGGuuCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 92555 0.67 0.837701
Target:  5'- gGAGUGggGGAaguugcgggaCUCGaCCGAGGCCu- -3'
miRNA:   3'- -CUCGCuuUCUgg--------GAGC-GGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 29515 0.67 0.829405
Target:  5'- -uGCGAAAGACCCgccaucUCGCCAccGUCu- -3'
miRNA:   3'- cuCGCUUUCUGGG------AGCGGUucCGGuc -5'
24756 3' -56.7 NC_005264.1 + 122073 0.67 0.826881
Target:  5'- -cGCGGAAGAUgUaggggacauaacauUUGCCGAGGCCGu -3'
miRNA:   3'- cuCGCUUUCUGgG--------------AGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 63083 0.67 0.82093
Target:  5'- cGGCG-AGGGCCgUCGCggaAAGGCCu- -3'
miRNA:   3'- cUCGCuUUCUGGgAGCGg--UUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 122532 0.67 0.82093
Target:  5'- gGGGCaGGGGAUCCUCGCCGuccGCCu- -3'
miRNA:   3'- -CUCGcUUUCUGGGAGCGGUuc-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 75707 0.67 0.82093
Target:  5'- cGGCGcGAAGAcuggugcgcCCCgcgggCGCCGgAGGCCAGu -3'
miRNA:   3'- cUCGC-UUUCU---------GGGa----GCGGU-UCCGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.