Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24756 | 3' | -56.7 | NC_005264.1 | + | 3505 | 0.67 | 0.82093 |
Target: 5'- gGGGCaGGGGAUCCUCGCCGuccGCCu- -3' miRNA: 3'- -CUCGcUUUCUGGGAGCGGUuc-CGGuc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 110902 | 0.68 | 0.803474 |
Target: 5'- uAGCGGc--ACCCUCGCCAAgcucGGCgCGGa -3' miRNA: 3'- cUCGCUuucUGGGAGCGGUU----CCG-GUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 152670 | 0.68 | 0.79451 |
Target: 5'- cGA-CGAcAAGAUaCUCGCCGAGGCCuGg -3' miRNA: 3'- -CUcGCU-UUCUGgGAGCGGUUCCGGuC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 140173 | 0.68 | 0.79451 |
Target: 5'- aGAGCGGcGAGACgCUCGuCCuucguGGGCCu- -3' miRNA: 3'- -CUCGCU-UUCUGgGAGC-GGu----UCCGGuc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 100509 | 0.68 | 0.79451 |
Target: 5'- cGGGCGAAAG-CCCUCauagacgaCAGGGCgGGu -3' miRNA: 3'- -CUCGCUUUCuGGGAGcg------GUUCCGgUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 18290 | 0.68 | 0.79451 |
Target: 5'- uAGCGGGAGAUCUccgucgucgUUGCgCGAGGCCGu -3' miRNA: 3'- cUCGCUUUCUGGG---------AGCG-GUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 47719 | 0.68 | 0.785399 |
Target: 5'- uGGCGGGAGGauagUCUaGCCAGGGCCAc -3' miRNA: 3'- cUCGCUUUCUg---GGAgCGGUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 21311 | 0.68 | 0.78448 |
Target: 5'- uGGCGGAcuuauGGgugcaguuguggcGCCCguagaugCGCCGGGGCCGGa -3' miRNA: 3'- cUCGCUU-----UC-------------UGGGa------GCGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 108228 | 0.68 | 0.77615 |
Target: 5'- -cGUGGccGAuguCCCgcacgCGCCGAGGCCGGc -3' miRNA: 3'- cuCGCUuuCU---GGGa----GCGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 64360 | 0.68 | 0.766773 |
Target: 5'- uGAG-GAGAuGCCCUCGCgCGugccGGCCGGg -3' miRNA: 3'- -CUCgCUUUcUGGGAGCG-GUu---CCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 31674 | 0.68 | 0.757277 |
Target: 5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3' miRNA: 3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 150124 | 0.68 | 0.757277 |
Target: 5'- uGGGCGGAgcaugucagaGGGCCCgcgcaCGCCAaaacaaucaGGGCCAc -3' miRNA: 3'- -CUCGCUU----------UCUGGGa----GCGGU---------UCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 120309 | 0.68 | 0.757277 |
Target: 5'- -cGCGGAAGcugcGCCCaCGCCAcacaucAGGCCAc -3' miRNA: 3'- cuCGCUUUC----UGGGaGCGGU------UCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 150700 | 0.68 | 0.757277 |
Target: 5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3' miRNA: 3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 160470 | 0.69 | 0.728161 |
Target: 5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3' miRNA: 3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 121813 | 0.69 | 0.728161 |
Target: 5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3' miRNA: 3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 41443 | 0.69 | 0.728161 |
Target: 5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3' miRNA: 3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 2787 | 0.69 | 0.728161 |
Target: 5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3' miRNA: 3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 104814 | 0.69 | 0.718278 |
Target: 5'- cGAGCGGgcgccgcacGAcGGCCUgucCGCCGGGGCCGc -3' miRNA: 3'- -CUCGCU---------UU-CUGGGa--GCGGUUCCGGUc -5' |
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24756 | 3' | -56.7 | NC_005264.1 | + | 136438 | 0.69 | 0.708321 |
Target: 5'- aGGCGGAAGAgCaugggCGCUGAGGCCGc -3' miRNA: 3'- cUCGCUUUCUgGga---GCGGUUCCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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