miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 87697 0.71 0.596465
Target:  5'- uGGCGu--GGCCCUCguggauGCCGAGGCCu- -3'
miRNA:   3'- cUCGCuuuCUGGGAG------CGGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 46376 0.71 0.616868
Target:  5'- -cGCGcAGGACaCCgauacgcgggUCGUCAGGGCCAGg -3'
miRNA:   3'- cuCGCuUUCUG-GG----------AGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 101174 0.71 0.627091
Target:  5'- cGAcCGAAcGGCCCUgagaacUGCCAGGGCCAa -3'
miRNA:   3'- -CUcGCUUuCUGGGA------GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 17810 0.7 0.66794
Target:  5'- uGGCGguAGGCCCUgGCCAcGGCa-- -3'
miRNA:   3'- cUCGCuuUCUGGGAgCGGUuCCGguc -5'
24756 3' -56.7 NC_005264.1 + 29468 0.7 0.6781
Target:  5'- -cGCGAu-GACUCUCGCCGagucgucgaggaGGGCCGc -3'
miRNA:   3'- cuCGCUuuCUGGGAGCGGU------------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 47719 0.68 0.785399
Target:  5'- uGGCGGGAGGauagUCUaGCCAGGGCCAc -3'
miRNA:   3'- cUCGCUUUCUg---GGAgCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 150700 0.68 0.757277
Target:  5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3'
miRNA:   3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 160470 0.69 0.728161
Target:  5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3'
miRNA:   3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 121813 0.69 0.728161
Target:  5'- gGAGUGGucGGCCCUCGaCCGcuGCCuGg -3'
miRNA:   3'- -CUCGCUuuCUGGGAGC-GGUucCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 136438 0.69 0.708321
Target:  5'- aGGCGGAAGAgCaugggCGCUGAGGCCGc -3'
miRNA:   3'- cUCGCUUUCUgGga---GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 25289 0.7 0.688223
Target:  5'- uGGGUGugguguGACCUaccacgUCGCCGAGGCCGa -3'
miRNA:   3'- -CUCGCuuu---CUGGG------AGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 12130 0.66 0.876247
Target:  5'- uGGCGGGcaGCCC-CGCCGAGaGCCc- -3'
miRNA:   3'- cUCGCUUucUGGGaGCGGUUC-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 40985 0.66 0.876247
Target:  5'- -cGCGAccGGCCCUCcGCCAacccguuuagguGGGCUc- -3'
miRNA:   3'- cuCGCUuuCUGGGAG-CGGU------------UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 116799 0.66 0.876247
Target:  5'- aGGCGAuuGcGCCCUgGCaucGGCCAGc -3'
miRNA:   3'- cUCGCUuuC-UGGGAgCGguuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 47312 0.66 0.883325
Target:  5'- cAGCGggGaacuGCCCgCGUCGAGGCguGg -3'
miRNA:   3'- cUCGCuuUc---UGGGaGCGGUUCCGguC- -5'
24756 3' -56.7 NC_005264.1 + 71336 0.66 0.883325
Target:  5'- -cGUGAAAGACUCguUCaugaacgagauaGCCgGAGGCCAGg -3'
miRNA:   3'- cuCGCUUUCUGGG--AG------------CGG-UUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 9057 0.66 0.890182
Target:  5'- uAGCGuuGAGGACCCgacgCGCUGAGGaCgAGc -3'
miRNA:   3'- cUCGC--UUUCUGGGa---GCGGUUCC-GgUC- -5'
24756 3' -56.7 NC_005264.1 + 11942 0.66 0.890182
Target:  5'- gGGGUGAAAGuCCaCUUGCCugacGAGGUCGc -3'
miRNA:   3'- -CUCGCUUUCuGG-GAGCGG----UUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 158998 0.66 0.890182
Target:  5'- cGGCGcAGGACCCaUGCCAGGaG-CAGg -3'
miRNA:   3'- cUCGCuUUCUGGGaGCGGUUC-CgGUC- -5'
24756 3' -56.7 NC_005264.1 + 40470 1.08 0.002952
Target:  5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3'
miRNA:   3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.