miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 160470 0.69 0.728161
Target:  5'- cGGGCGAc-GGCCaCUCgguGCCAGGGUUAGg -3'
miRNA:   3'- -CUCGCUuuCUGG-GAG---CGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 160012 0.66 0.876247
Target:  5'- -cGCGAccGGCCCUCcGCCAacccguuuagguGGGCUc- -3'
miRNA:   3'- cuCGCUuuCUGGGAG-CGGU------------UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 159497 1.08 0.002952
Target:  5'- gGAGCGAAAGACCCUCGCCAAGGCCAGu -3'
miRNA:   3'- -CUCGCUUUCUGGGAGCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 158998 0.66 0.890182
Target:  5'- cGGCGcAGGACCCaUGCCAGGaG-CAGg -3'
miRNA:   3'- cUCGCuUUCUGGGaGCGGUUC-CgGUC- -5'
24756 3' -56.7 NC_005264.1 + 158795 0.7 0.6983
Target:  5'- aAGaGGAGGACCaauuauUCGCCGAGGCCu- -3'
miRNA:   3'- cUCgCUUUCUGGg-----AGCGGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 158032 0.66 0.892194
Target:  5'- aGAGCGAcgacggauggaccAGGGCgUUCGCCAAcgacccagucggacuGGCCGa -3'
miRNA:   3'- -CUCGCU-------------UUCUGgGAGCGGUU---------------CCGGUc -5'
24756 3' -56.7 NC_005264.1 + 157320 0.66 0.867465
Target:  5'- cGGCGAcguucguuacGCCUUCGCgGAGGCCGa -3'
miRNA:   3'- cUCGCUuuc-------UGGGAGCGgUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 155564 0.7 0.66794
Target:  5'- uGGCGggGcucuCCgUCGCCAAGGCUAc -3'
miRNA:   3'- cUCGCuuUcu--GGgAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 152767 0.67 0.845811
Target:  5'- cGGCGGGAGAUUC-CGCCGcGGCUg- -3'
miRNA:   3'- cUCGCUUUCUGGGaGCGGUuCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 152670 0.68 0.79451
Target:  5'- cGA-CGAcAAGAUaCUCGCCGAGGCCuGg -3'
miRNA:   3'- -CUcGCU-UUCUGgGAGCGGUUCCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 150700 0.68 0.757277
Target:  5'- -cGCGAggcAGGGCUCUCGgCGGGGCUg- -3'
miRNA:   3'- cuCGCU---UUCUGGGAGCgGUUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 150124 0.68 0.757277
Target:  5'- uGGGCGGAgcaugucagaGGGCCCgcgcaCGCCAaaacaaucaGGGCCAc -3'
miRNA:   3'- -CUCGCUU----------UCUGGGa----GCGGU---------UCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 144831 0.66 0.861442
Target:  5'- -cGCGGccGACCCgcCGCCGucAGaGCCGGu -3'
miRNA:   3'- cuCGCUuuCUGGGa-GCGGU--UC-CGGUC- -5'
24756 3' -56.7 NC_005264.1 + 144422 0.71 0.596465
Target:  5'- cGAGCGAGAGggcGCgCCUgCGCC--GGCCGGa -3'
miRNA:   3'- -CUCGCUUUC---UG-GGA-GCGGuuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 141763 0.67 0.854507
Target:  5'- aGGCGAGcacggcauauggcuuGGCCaacgCGCUAAGGCCGGc -3'
miRNA:   3'- cUCGCUUu--------------CUGGga--GCGGUUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 141464 0.67 0.853726
Target:  5'- cGAGCGgcGGGgCCUCuuuccaccgGCCGAGGCg-- -3'
miRNA:   3'- -CUCGCuuUCUgGGAG---------CGGUUCCGguc -5'
24756 3' -56.7 NC_005264.1 + 140173 0.68 0.79451
Target:  5'- aGAGCGGcGAGACgCUCGuCCuucguGGGCCu- -3'
miRNA:   3'- -CUCGCU-UUCUGgGAGC-GGu----UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 136686 0.75 0.414404
Target:  5'- -cGCGAAAG-UCCUCGCCGcGGCCuGg -3'
miRNA:   3'- cuCGCUUUCuGGGAGCGGUuCCGGuC- -5'
24756 3' -56.7 NC_005264.1 + 136438 0.69 0.708321
Target:  5'- aGGCGGAAGAgCaugggCGCUGAGGCCGc -3'
miRNA:   3'- cUCGCUUUCUgGga---GCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 134930 0.7 0.64754
Target:  5'- -cGCGGucGucgucgcucACCCUCGCCGAgacgcuGGCCAGa -3'
miRNA:   3'- cuCGCUuuC---------UGGGAGCGGUU------CCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.