Results 41 - 60 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24757 | 5' | -63.5 | NC_005264.1 | + | 133697 | 0.66 | 0.611436 |
Target: 5'- cGGUCCUU-GCCGCCGCgCacuggugcugccucuGGccgacagcccUUGCGGCg -3' miRNA: 3'- -CCAGGAGcCGGCGGCG-G---------------UC----------AGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 125752 | 0.66 | 0.607611 |
Target: 5'- cGUCCcCGGaaCUGCCGCCGcGUCGCu-- -3' miRNA: 3'- cCAGGaGCC--GGCGGCGGU-CAGCGccg -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 42686 | 0.66 | 0.607611 |
Target: 5'- aGGUCugCUCGGUCaUCGCCGG-C-CGGCg -3' miRNA: 3'- -CCAG--GAGCCGGcGGCGGUCaGcGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 97603 | 0.66 | 0.607611 |
Target: 5'- -uUCCUCGGCCGCgGCgGcUa-CGGCu -3' miRNA: 3'- ccAGGAGCCGGCGgCGgUcAgcGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 162710 | 0.66 | 0.607611 |
Target: 5'- cGUUaa-GGCgGCCGCCGGggaGCGGg -3' miRNA: 3'- cCAGgagCCGgCGGCGGUCag-CGCCg -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 43684 | 0.66 | 0.607611 |
Target: 5'- cGUUaa-GGCgGCCGCCGGggaGCGGg -3' miRNA: 3'- cCAGgagCCGgCGGCGGUCag-CGCCg -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 46410 | 0.66 | 0.606656 |
Target: 5'- aGGUCCgccgcgaGGCUGCaCGCCGcccugcgcucgacGUCggccuGCGGCu -3' miRNA: 3'- -CCAGGag-----CCGGCG-GCGGU-------------CAG-----CGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 7873 | 0.66 | 0.598062 |
Target: 5'- cGG-CgUCGG-CGCC-CCAGaUGCGGCg -3' miRNA: 3'- -CCaGgAGCCgGCGGcGGUCaGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 91891 | 0.66 | 0.598062 |
Target: 5'- gGGUggUUGGCCGCgGCagcgaugggCGGgCGCGGCg -3' miRNA: 3'- -CCAggAGCCGGCGgCG---------GUCaGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 20034 | 0.66 | 0.598062 |
Target: 5'- aGUCCUaccaUGGCCuggcauGUCGCCA--CGCGGCc -3' miRNA: 3'- cCAGGA----GCCGG------CGGCGGUcaGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 92143 | 0.66 | 0.598062 |
Target: 5'- cGUCUUCGcGCUGUCGCC---CGCGGg -3' miRNA: 3'- cCAGGAGC-CGGCGGCGGucaGCGCCg -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 50015 | 0.66 | 0.598062 |
Target: 5'- cGUCaugaaCGGCaUGCUGCCgugccucgaGGUUGCGGCa -3' miRNA: 3'- cCAGga---GCCG-GCGGCGG---------UCAGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 126899 | 0.66 | 0.598062 |
Target: 5'- cGG-CgUCGG-CGCC-CCAGaUGCGGCg -3' miRNA: 3'- -CCaGgAGCCgGCGGcGGUCaGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 63052 | 0.66 | 0.598062 |
Target: 5'- --gCCUCGGCCGCCuugaucUCGGUCuccagcuCGGCg -3' miRNA: 3'- ccaGGAGCCGGCGGc-----GGUCAGc------GCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 9323 | 0.66 | 0.598062 |
Target: 5'- aGGUUCcguUCGuCC-CCGCCAGggGCGGCc -3' miRNA: 3'- -CCAGG---AGCcGGcGGCGGUCagCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 91223 | 0.66 | 0.598062 |
Target: 5'- --aUCUCuGCCGCCGCC--UCGcCGGUg -3' miRNA: 3'- ccaGGAGcCGGCGGCGGucAGC-GCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 75310 | 0.66 | 0.598062 |
Target: 5'- -cUCCUCGGagGCCGCgGGcggcucaucgaUCGCGGa -3' miRNA: 3'- ccAGGAGCCggCGGCGgUC-----------AGCGCCg -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 74095 | 0.67 | 0.588535 |
Target: 5'- uGGUCgUacauggcgCGGUCGaCGCU-GUCGCGGCu -3' miRNA: 3'- -CCAGgA--------GCCGGCgGCGGuCAGCGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 22056 | 0.67 | 0.588535 |
Target: 5'- --gCCUUGgacgguagcGCCGCCGCCGGaagGCGGUu -3' miRNA: 3'- ccaGGAGC---------CGGCGGCGGUCag-CGCCG- -5' |
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24757 | 5' | -63.5 | NC_005264.1 | + | 60728 | 0.67 | 0.588535 |
Target: 5'- cGG-CCUCGuaCCGCCGCCAGcCGUc-- -3' miRNA: 3'- -CCaGGAGCc-GGCGGCGGUCaGCGccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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