miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 71808 0.66 0.63633
Target:  5'- -cUCCgcauagCGGCCgaaGCCGCCcgcggGGUCGCGa- -3'
miRNA:   3'- ccAGGa-----GCCGG---CGGCGG-----UCAGCGCcg -5'
24757 5' -63.5 NC_005264.1 + 52500 0.66 0.63633
Target:  5'- uGGUCUacugaaGGCUGCaCGCC-GUCGaacaGGCu -3'
miRNA:   3'- -CCAGGag----CCGGCG-GCGGuCAGCg---CCG- -5'
24757 5' -63.5 NC_005264.1 + 57985 0.66 0.626752
Target:  5'- aGUCCccgcgCGGCgGCCGUgGcUCaGCGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGgUcAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 80651 0.66 0.626752
Target:  5'- cGUCUaauacgaUGGCCGCCGCCgaccGGcCGCacGGCa -3'
miRNA:   3'- cCAGGa------GCCGGCGGCGG----UCaGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 4541 0.66 0.626752
Target:  5'- uGGUCUUCGGCguCG-CGCCAaGUCuCGGg -3'
miRNA:   3'- -CCAGGAGCCG--GCgGCGGU-CAGcGCCg -5'
24757 5' -63.5 NC_005264.1 + 83281 0.66 0.626752
Target:  5'- --aUUUCGGCCGCaagGCCuuGcCGCGGUg -3'
miRNA:   3'- ccaGGAGCCGGCGg--CGGu-CaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 123568 0.66 0.626752
Target:  5'- uGGUCUUCGGCguCG-CGCCAaGUCuCGGg -3'
miRNA:   3'- -CCAGGAGCCG--GCgGCGGU-CAGcGCCg -5'
24757 5' -63.5 NC_005264.1 + 46877 0.66 0.625794
Target:  5'- cGUCCcugUCGGgCGCCGCguaccuccUAGcugcgccgcguguUCGCGGCu -3'
miRNA:   3'- cCAGG---AGCCgGCGGCG--------GUC-------------AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 137969 0.66 0.617177
Target:  5'- --gCCUCGuGCCGCC-CCGGcUC-CGGUa -3'
miRNA:   3'- ccaGGAGC-CGGCGGcGGUC-AGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 84957 0.66 0.617177
Target:  5'- gGGUgCUCgcuugcggccaGGCUGCUGCguuagcGUCGUGGCg -3'
miRNA:   3'- -CCAgGAG-----------CCGGCGGCGgu----CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 109892 0.66 0.617177
Target:  5'- --cCCgCGGCgcaaugCGCCGCgGG-CGCGGCc -3'
miRNA:   3'- ccaGGaGCCG------GCGGCGgUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 69656 0.66 0.617177
Target:  5'- cGUaCCUCaGCUGCucCGcCCAGUCuggaGCGGCg -3'
miRNA:   3'- cCA-GGAGcCGGCG--GC-GGUCAG----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 522 0.66 0.617177
Target:  5'- uGGcCCa-GGCCGaCCGaUCAGaccCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGC-GGC-GGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 127840 0.66 0.617177
Target:  5'- -cUCCgCGGCgGCCGgCGGUCuagaaccCGGCg -3'
miRNA:   3'- ccAGGaGCCGgCGGCgGUCAGc------GCCG- -5'
24757 5' -63.5 NC_005264.1 + 9543 0.66 0.617177
Target:  5'- --gCCUUuGUCGCUcgcaGCCGGUgGCGGCu -3'
miRNA:   3'- ccaGGAGcCGGCGG----CGGUCAgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 159305 0.66 0.617177
Target:  5'- -----cUGGaCGCCGCCGcGUCGCGGUu -3'
miRNA:   3'- ccaggaGCCgGCGGCGGU-CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 119549 0.66 0.617177
Target:  5'- uGGcCCa-GGCCGaCCGaUCAGaccCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGC-GGC-GGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 40278 0.66 0.617177
Target:  5'- -----cUGGaCGCCGCCGcGUCGCGGUu -3'
miRNA:   3'- ccaggaGCCgGCGGCGGU-CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 145917 0.66 0.615263
Target:  5'- cGGgaagaacGCCGCCGCCAucGUCcGCGGCc -3'
miRNA:   3'- -CCaggagc-CGGCGGCGGU--CAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 69048 0.66 0.614306
Target:  5'- -cUCUUUGGCCGCgGCCGccgggcaggucaucGUCGuCGcGCa -3'
miRNA:   3'- ccAGGAGCCGGCGgCGGU--------------CAGC-GC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.