miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 6904 0.68 0.477809
Target:  5'- --gCCUUGGCUGCUGCC-GUUGC-GCg -3'
miRNA:   3'- ccaGGAGCCGGCGGCGGuCAGCGcCG- -5'
24757 5' -63.5 NC_005264.1 + 6997 0.66 0.63633
Target:  5'- -cUCCUCGG-CGUgGCC---CGCGGCg -3'
miRNA:   3'- ccAGGAGCCgGCGgCGGucaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 7364 0.69 0.466394
Target:  5'- -aUCUggCGGCCGCCGCgguuuucauuucuuCGaUCGCGGCc -3'
miRNA:   3'- ccAGGa-GCCGGCGGCG--------------GUcAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 7740 0.69 0.463779
Target:  5'- cGUCCUCGGaaacgggcucuccgCGUCGgCAGUCG-GGCa -3'
miRNA:   3'- cCAGGAGCCg-------------GCGGCgGUCAGCgCCG- -5'
24757 5' -63.5 NC_005264.1 + 7873 0.66 0.598062
Target:  5'- cGG-CgUCGG-CGCC-CCAGaUGCGGCg -3'
miRNA:   3'- -CCaGgAGCCgGCGGcGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 7946 0.68 0.513755
Target:  5'- cGUCCaCGGCCGCggCGUCuuuGUCGCuGCc -3'
miRNA:   3'- cCAGGaGCCGGCG--GCGGu--CAGCGcCG- -5'
24757 5' -63.5 NC_005264.1 + 8066 0.66 0.645906
Target:  5'- cGUCg-CGGCCGCaGUCGGgcacggGCGGCg -3'
miRNA:   3'- cCAGgaGCCGGCGgCGGUCag----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 8218 0.7 0.418104
Target:  5'- --cCCgCGGCCGCugguccgaguaCGCCAG-CGCGGUu -3'
miRNA:   3'- ccaGGaGCCGGCG-----------GCGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 9323 0.66 0.598062
Target:  5'- aGGUUCcguUCGuCC-CCGCCAGggGCGGCc -3'
miRNA:   3'- -CCAGG---AGCcGGcGGCGGUCagCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 9543 0.66 0.617177
Target:  5'- --gCCUUuGUCGCUcgcaGCCGGUgGCGGCu -3'
miRNA:   3'- ccaGGAGcCGGCGG----CGGUCAgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 9876 0.68 0.522917
Target:  5'- cGGUCC-CGGCgCGCCacggccuucCCAGcccUgGCGGCa -3'
miRNA:   3'- -CCAGGaGCCG-GCGGc--------GGUC---AgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 10527 0.71 0.363163
Target:  5'- gGGUCCUgugCGG-CGCCGCCcucAGgggCGCGGa -3'
miRNA:   3'- -CCAGGA---GCCgGCGGCGG---UCa--GCGCCg -5'
24757 5' -63.5 NC_005264.1 + 10987 0.68 0.477809
Target:  5'- --cCCaCGuGUCGCCGCCGGa-GCGGCg -3'
miRNA:   3'- ccaGGaGC-CGGCGGCGGUCagCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 11849 0.67 0.550758
Target:  5'- cGGaCacgCGGCCcgucGCCGCCAcUCGCGaGCu -3'
miRNA:   3'- -CCaGga-GCCGG----CGGCGGUcAGCGC-CG- -5'
24757 5' -63.5 NC_005264.1 + 12521 0.68 0.532141
Target:  5'- cGUCCUC-GCUGCaucuaGCCGGUaggaGCGGg -3'
miRNA:   3'- cCAGGAGcCGGCGg----CGGUCAg---CGCCg -5'
24757 5' -63.5 NC_005264.1 + 13032 0.69 0.434705
Target:  5'- cGGgacCCUaCGGCCGCuCGUCugcuGUCGUuuGGCg -3'
miRNA:   3'- -CCa--GGA-GCCGGCG-GCGGu---CAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 13200 0.72 0.306767
Target:  5'- cGGaUCCgUC-GCCGCCGCC-GUCGCcgGGCu -3'
miRNA:   3'- -CC-AGG-AGcCGGCGGCGGuCAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 16161 0.7 0.39315
Target:  5'- aGGg---CGGCaauGCCGCCcugcgcggaggucGGUCGCGGCa -3'
miRNA:   3'- -CCaggaGCCGg--CGGCGG-------------UCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 16770 0.68 0.495635
Target:  5'- aGGUCC-CGaucGUCGCCGgCGGUCucuGUGGCc -3'
miRNA:   3'- -CCAGGaGC---CGGCGGCgGUCAG---CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 16998 0.68 0.487575
Target:  5'- cGGUCCaaacagacucagggaCGGCaaaggcggcgauCGUCGCCAGcagCGCGGCc -3'
miRNA:   3'- -CCAGGa--------------GCCG------------GCGGCGGUCa--GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.