miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 132 0.68 0.504659
Target:  5'- -cUCCcCGGCgGCCGCCuuaaCGcCGGCg -3'
miRNA:   3'- ccAGGaGCCGgCGGCGGuca-GC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 245 0.67 0.550758
Target:  5'- aGGUUUgugCGGCgG-CGCUGGaCGCGGCa -3'
miRNA:   3'- -CCAGGa--GCCGgCgGCGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 522 0.66 0.617177
Target:  5'- uGGcCCa-GGCCGaCCGaUCAGaccCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGC-GGC-GGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 1599 0.7 0.41483
Target:  5'- aGGUUCUgGGCCagggauacgggaCGCCGGUgggCGCGGCu -3'
miRNA:   3'- -CCAGGAgCCGGcg----------GCGGUCA---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 2666 0.68 0.522917
Target:  5'- aGUCCUCuGGCCccgaCCGCgAGggcagCGUGGUg -3'
miRNA:   3'- cCAGGAG-CCGGc---GGCGgUCa----GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 2845 0.74 0.240532
Target:  5'- cGGUCgcgCUCGcGCCGUCGCCcGcUGCGGCu -3'
miRNA:   3'- -CCAG---GAGC-CGGCGGCGGuCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 3466 0.7 0.401893
Target:  5'- gGGUCUcgggggcgaUgGGCuUGCCGCCGcaCGCGGCg -3'
miRNA:   3'- -CCAGG---------AgCCG-GCGGCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 3512 0.69 0.460305
Target:  5'- gGGaUCCUC-GCCGuCCGCCucGUCgaaccgcgacGCGGCg -3'
miRNA:   3'- -CC-AGGAGcCGGC-GGCGGu-CAG----------CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 3777 0.73 0.281183
Target:  5'- gGGcCCUUGGucgaCCGCCGCCGaucugCGUGGCg -3'
miRNA:   3'- -CCaGGAGCC----GGCGGCGGUca---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 3961 0.7 0.378342
Target:  5'- cGUCCUggccgcgcCGGCCGgcuuuaCCGCCAGcaggGCGGCa -3'
miRNA:   3'- cCAGGA--------GCCGGC------GGCGGUCag--CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 4256 0.69 0.451682
Target:  5'- aGUCC-CGGCuUGCCGCgCGGgaacCGCGGg -3'
miRNA:   3'- cCAGGaGCCG-GCGGCG-GUCa---GCGCCg -5'
24757 5' -63.5 NC_005264.1 + 4274 0.69 0.469015
Target:  5'- aGUCUguUCGGCCuGCauggcugGCCAGUaagaGCGGCc -3'
miRNA:   3'- cCAGG--AGCCGG-CGg------CGGUCAg---CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 4541 0.66 0.626752
Target:  5'- uGGUCUUCGGCguCG-CGCCAaGUCuCGGg -3'
miRNA:   3'- -CCAGGAGCCG--GCgGCGGU-CAGcGCCg -5'
24757 5' -63.5 NC_005264.1 + 4584 0.66 0.645906
Target:  5'- cGGgaaCgcaGGCCcuccCCGCCAGcgcCGCGGCg -3'
miRNA:   3'- -CCag-Gag-CCGGc---GGCGGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 5240 0.67 0.56768
Target:  5'- cGG-CCUCGGguacguuuagagCGCCgggagGCgAGUCGCGGCc -3'
miRNA:   3'- -CCaGGAGCCg-----------GCGG-----CGgUCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 5821 0.72 0.293758
Target:  5'- aGUCCggcggCGGUgGCCGCCAcUCGCcuGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGGUcAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 6214 0.74 0.216575
Target:  5'- cGUCCUuugaccccccgccgCGGCCGCCGCgAgacuugccgccuccGUCGCGGUc -3'
miRNA:   3'- cCAGGA--------------GCCGGCGGCGgU--------------CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 6461 0.71 0.348413
Target:  5'- -cUCCUCGGCgGCgcggcgaaCGUCGGggugCGCGGCc -3'
miRNA:   3'- ccAGGAGCCGgCG--------GCGGUCa---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 6814 0.69 0.460305
Target:  5'- cGGUCa--GGgUGuuGCCGGagGCGGCg -3'
miRNA:   3'- -CCAGgagCCgGCggCGGUCagCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 6888 0.67 0.569569
Target:  5'- cGUCCgCGaGCCGCgCagucCCAGcgCGCGGCu -3'
miRNA:   3'- cCAGGaGC-CGGCG-Gc---GGUCa-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.