miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 162710 0.66 0.607611
Target:  5'- cGUUaa-GGCgGCCGCCGGggaGCGGg -3'
miRNA:   3'- cCAGgagCCGgCGGCGGUCag-CGCCg -5'
24757 5' -63.5 NC_005264.1 + 161281 0.67 0.560141
Target:  5'- aGUCCggcCGGggcCCGCCuauuGCCGG-CGCGGUc -3'
miRNA:   3'- cCAGGa--GCC---GGCGG----CGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 160441 0.67 0.579035
Target:  5'- -uUCCUaggcaGGCCGgCGCCGGgcuccUGCGGg -3'
miRNA:   3'- ccAGGAg----CCGGCgGCGGUCa----GCGCCg -5'
24757 5' -63.5 NC_005264.1 + 159761 1.12 0.000455
Target:  5'- gGGUCCUCGGCCGCCGCCAGUCGCGGCg -3'
miRNA:   3'- -CCAGGAGCCGGCGGCGGUCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 159687 0.72 0.306767
Target:  5'- gGGUCgccguUUCGGuuGCCGCCAGgacgaugaCGaCGGCu -3'
miRNA:   3'- -CCAG-----GAGCCggCGGCGGUCa-------GC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 159305 0.66 0.617177
Target:  5'- -----cUGGaCGCCGCCGcGUCGCGGUu -3'
miRNA:   3'- ccaggaGCCgGCGGCGGU-CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 158855 0.66 0.63633
Target:  5'- --aCC-C-GCCGCCGCCGaaUGCGGCu -3'
miRNA:   3'- ccaGGaGcCGGCGGCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 158565 0.71 0.370699
Target:  5'- --cUCUCuGCCGCCGCCccgcGGUucccgCGCGGCa -3'
miRNA:   3'- ccaGGAGcCGGCGGCGG----UCA-----GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 157558 0.66 0.645906
Target:  5'- gGGUCa---GCCGCCGCCccgccGUC-CGGCc -3'
miRNA:   3'- -CCAGgagcCGGCGGCGGu----CAGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 155585 0.7 0.401893
Target:  5'- cGUCCUgGcGCCGaccuCCGCCaAGUCcucgcGCGGCa -3'
miRNA:   3'- cCAGGAgC-CGGC----GGCGG-UCAG-----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 155482 0.68 0.522917
Target:  5'- --aCCgCGGCgGCCGCCAGauuUUGcCGGUg -3'
miRNA:   3'- ccaGGaGCCGgCGGCGGUC---AGC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 152867 0.68 0.522917
Target:  5'- uGGg-CUCGGCauCGCCGCacgGGUC-CGGCa -3'
miRNA:   3'- -CCagGAGCCG--GCGGCGg--UCAGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 150971 0.67 0.569569
Target:  5'- ---gCUCGGCUcugaGCuCGCgAGUgGCGGCg -3'
miRNA:   3'- ccagGAGCCGG----CG-GCGgUCAgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 150824 0.68 0.513755
Target:  5'- aGGgcggCGGUCGCCGCCgcaGGUCGUGacGCg -3'
miRNA:   3'- -CCaggaGCCGGCGGCGG---UCAGCGC--CG- -5'
24757 5' -63.5 NC_005264.1 + 150709 0.68 0.503754
Target:  5'- gGGcUCUCGGCgggGCUGCCcgccaaaGGUCGCGcGCg -3'
miRNA:   3'- -CCaGGAGCCGg--CGGCGG-------UCAGCGC-CG- -5'
24757 5' -63.5 NC_005264.1 + 149426 0.69 0.469015
Target:  5'- gGGcCUUUGGCUGuuGCUcgGGUUGaCGGCg -3'
miRNA:   3'- -CCaGGAGCCGGCggCGG--UCAGC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 149425 0.68 0.477809
Target:  5'- cGG-CggCGGUCGCgCGCCGGUgcggagagcUGCGGCg -3'
miRNA:   3'- -CCaGgaGCCGGCG-GCGGUCA---------GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 149397 0.7 0.418104
Target:  5'- --cCUUCGG-CGCCGCCGcGUCGCgucucGGCg -3'
miRNA:   3'- ccaGGAGCCgGCGGCGGU-CAGCG-----CCG- -5'
24757 5' -63.5 NC_005264.1 + 145917 0.66 0.615263
Target:  5'- cGGgaagaacGCCGCCGCCAucGUCcGCGGCc -3'
miRNA:   3'- -CCaggagc-CGGCGGCGGU--CAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 145482 0.67 0.541422
Target:  5'- --aCCgc-GCCGCCGCCAGcugcCGCGGa -3'
miRNA:   3'- ccaGGagcCGGCGGCGGUCa---GCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.