miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 65591 0.65 0.654517
Target:  5'- aGGcCCggCGGCCacaucuuGCUGCUGcGuUCGCGGCu -3'
miRNA:   3'- -CCaGGa-GCCGG-------CGGCGGU-C-AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 43896 0.65 0.651648
Target:  5'- gGGgcgCCggagacgauagcgCGGCCGUCGCCucgacGUCGagGGCc -3'
miRNA:   3'- -CCa--GGa------------GCCGGCGGCGGu----CAGCg-CCG- -5'
24757 5' -63.5 NC_005264.1 + 91223 0.66 0.598062
Target:  5'- --aUCUCuGCCGCCGCC--UCGcCGGUg -3'
miRNA:   3'- ccaGGAGcCGGCGGCGGucAGC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 69656 0.66 0.617177
Target:  5'- cGUaCCUCaGCUGCucCGcCCAGUCuggaGCGGCg -3'
miRNA:   3'- cCA-GGAGcCGGCG--GC-GGUCAG----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 162710 0.66 0.607611
Target:  5'- cGUUaa-GGCgGCCGCCGGggaGCGGg -3'
miRNA:   3'- cCAGgagCCGgCGGCGGUCag-CGCCg -5'
24757 5' -63.5 NC_005264.1 + 126899 0.66 0.598062
Target:  5'- cGG-CgUCGG-CGCC-CCAGaUGCGGCg -3'
miRNA:   3'- -CCaGgAGCCgGCGGcGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 46410 0.66 0.606656
Target:  5'- aGGUCCgccgcgaGGCUGCaCGCCGcccugcgcucgacGUCggccuGCGGCu -3'
miRNA:   3'- -CCAGGag-----CCGGCG-GCGGU-------------CAG-----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 9543 0.66 0.617177
Target:  5'- --gCCUUuGUCGCUcgcaGCCGGUgGCGGCu -3'
miRNA:   3'- ccaGGAGcCGGCGG----CGGUCAgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 50015 0.66 0.598062
Target:  5'- cGUCaugaaCGGCaUGCUGCCgugccucgaGGUUGCGGCa -3'
miRNA:   3'- cCAGga---GCCG-GCGGCGG---------UCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 57985 0.66 0.626752
Target:  5'- aGUCCccgcgCGGCgGCCGUgGcUCaGCGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGgUcAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 123568 0.66 0.626752
Target:  5'- uGGUCUUCGGCguCG-CGCCAaGUCuCGGg -3'
miRNA:   3'- -CCAGGAGCCG--GCgGCGGU-CAGcGCCg -5'
24757 5' -63.5 NC_005264.1 + 20034 0.66 0.598062
Target:  5'- aGUCCUaccaUGGCCuggcauGUCGCCA--CGCGGCc -3'
miRNA:   3'- cCAGGA----GCCGG------CGGCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 97603 0.66 0.607611
Target:  5'- -uUCCUCGGCCGCgGCgGcUa-CGGCu -3'
miRNA:   3'- ccAGGAGCCGGCGgCGgUcAgcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 80651 0.66 0.626752
Target:  5'- cGUCUaauacgaUGGCCGCCGCCgaccGGcCGCacGGCa -3'
miRNA:   3'- cCAGGa------GCCGGCGGCGG----UCaGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 42686 0.66 0.607611
Target:  5'- aGGUCugCUCGGUCaUCGCCGG-C-CGGCg -3'
miRNA:   3'- -CCAG--GAGCCGGcGGCGGUCaGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 119549 0.66 0.617177
Target:  5'- uGGcCCa-GGCCGaCCGaUCAGaccCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGC-GGC-GGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 159305 0.66 0.617177
Target:  5'- -----cUGGaCGCCGCCGcGUCGCGGUu -3'
miRNA:   3'- ccaggaGCCgGCGGCGGU-CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 63052 0.66 0.598062
Target:  5'- --gCCUCGGCCGCCuugaucUCGGUCuccagcuCGGCg -3'
miRNA:   3'- ccaGGAGCCGGCGGc-----GGUCAGc------GCCG- -5'
24757 5' -63.5 NC_005264.1 + 91891 0.66 0.598062
Target:  5'- gGGUggUUGGCCGCgGCagcgaugggCGGgCGCGGCg -3'
miRNA:   3'- -CCAggAGCCGGCGgCG---------GUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 133697 0.66 0.611436
Target:  5'- cGGUCCUU-GCCGCCGCgCacuggugcugccucuGGccgacagcccUUGCGGCg -3'
miRNA:   3'- -CCAGGAGcCGGCGGCG-G---------------UC----------AGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.