miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 34884 0.7 0.401893
Target:  5'- cGGUUC-CaGGCCGCCGCCuucuUCGagGGCa -3'
miRNA:   3'- -CCAGGaG-CCGGCGGCGGuc--AGCg-CCG- -5'
24757 5' -63.5 NC_005264.1 + 125488 0.71 0.348413
Target:  5'- -cUCCUCGGCgGCgcggcgaaCGUCGGggugCGCGGCc -3'
miRNA:   3'- ccAGGAGCCGgCG--------GCGGUCa---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 129554 0.71 0.363163
Target:  5'- gGGUCCUgugCGG-CGCCGCCcucAGgggCGCGGa -3'
miRNA:   3'- -CCAGGA---GCCgGCGGCGG---UCa--GCGCCg -5'
24757 5' -63.5 NC_005264.1 + 158565 0.71 0.370699
Target:  5'- --cUCUCuGCCGCCGCCccgcGGUucccgCGCGGCa -3'
miRNA:   3'- ccaGGAGcCGGCGGCGG----UCA-----GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 141604 0.7 0.378342
Target:  5'- ---aCUCGaGCCGUCGUCAacgcggaaagccGUCGCGGCc -3'
miRNA:   3'- ccagGAGC-CGGCGGCGGU------------CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 32622 0.7 0.39394
Target:  5'- aGGUCUU-GGCCGCCaaCGGUCacaaGUGGCa -3'
miRNA:   3'- -CCAGGAgCCGGCGGcgGUCAG----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 114447 0.7 0.39394
Target:  5'- -cUCCU-GGCCGCCGCCcgacgccccAGUCuacCGGCu -3'
miRNA:   3'- ccAGGAgCCGGCGGCGG---------UCAGc--GCCG- -5'
24757 5' -63.5 NC_005264.1 + 122493 0.7 0.401893
Target:  5'- gGGUCUcgggggcgaUgGGCuUGCCGCCGcaCGCGGCg -3'
miRNA:   3'- -CCAGG---------AgCCG-GCGGCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 155585 0.7 0.401893
Target:  5'- cGUCCUgGcGCCGaccuCCGCCaAGUCcucgcGCGGCa -3'
miRNA:   3'- cCAGGAgC-CGGC----GGCGG-UCAG-----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 58742 0.71 0.3412
Target:  5'- -aUCCgCGGCCGCCGCUgcgcuaucagAGgcgcacgCGCGGUg -3'
miRNA:   3'- ccAGGaGCCGGCGGCGG----------UCa------GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 55901 0.71 0.325022
Target:  5'- -aUCCUgCGGCCGCCGCagcuGUCGaggaaaaagugaccCGGCu -3'
miRNA:   3'- ccAGGA-GCCGGCGGCGgu--CAGC--------------GCCG- -5'
24757 5' -63.5 NC_005264.1 + 36536 0.72 0.320213
Target:  5'- aGGagCCaUCGGCCGCgCGCCcGaaaGCGGCa -3'
miRNA:   3'- -CCa-GG-AGCCGGCG-GCGGuCag-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 125241 0.74 0.216575
Target:  5'- cGUCCUuugaccccccgccgCGGCCGCCGCgAgacuugccgccuccGUCGCGGUc -3'
miRNA:   3'- cCAGGA--------------GCCGGCGGCGgU--------------CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 121871 0.74 0.240532
Target:  5'- cGGUCgcgCUCGcGCCGUCGCCcGcUGCGGCu -3'
miRNA:   3'- -CCAG---GAGC-CGGCGGCGGuCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 104120 0.73 0.269039
Target:  5'- cGUCCcccuggUGGCCGcCCGCCuAGUaaaCGCGGCc -3'
miRNA:   3'- cCAGGa-----GCCGGC-GGCGG-UCA---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 122803 0.73 0.281183
Target:  5'- gGGcCCUUGGucgaCCGCCGCCGaucugCGUGGCg -3'
miRNA:   3'- -CCaGGAGCC----GGCGGCGGUca---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 124847 0.72 0.293758
Target:  5'- aGUCCggcggCGGUgGCCGCCAcUCGCcuGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGGUcAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 67484 0.72 0.300208
Target:  5'- aGG-CCg-GGCCGCCGCCccgccgAGuccguuUCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGCGGCGG------UC------AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 132227 0.72 0.306767
Target:  5'- cGGaUCCgUC-GCCGCCGCC-GUCGCcgGGCu -3'
miRNA:   3'- -CC-AGG-AGcCGGCGGCGGuCAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 159687 0.72 0.306767
Target:  5'- gGGUCgccguUUCGGuuGCCGCCAGgacgaugaCGaCGGCu -3'
miRNA:   3'- -CCAG-----GAGCCggCGGCGGUCa-------GC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.