miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 43896 0.65 0.651648
Target:  5'- gGGgcgCCggagacgauagcgCGGCCGUCGCCucgacGUCGagGGCc -3'
miRNA:   3'- -CCa--GGa------------GCCGGCGGCGGu----CAGCg-CCG- -5'
24757 5' -63.5 NC_005264.1 + 84957 0.66 0.617177
Target:  5'- gGGUgCUCgcuugcggccaGGCUGCUGCguuagcGUCGUGGCg -3'
miRNA:   3'- -CCAgGAG-----------CCGGCGGCGgu----CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 137969 0.66 0.617177
Target:  5'- --gCCUCGuGCCGCC-CCGGcUC-CGGUa -3'
miRNA:   3'- ccaGGAGC-CGGCGGcGGUC-AGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 40735 1.12 0.000455
Target:  5'- gGGUCCUCGGCCGCCGCCAGUCGCGGCg -3'
miRNA:   3'- -CCAGGAGCCGGCGGCGGUCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 38531 0.66 0.645906
Target:  5'- gGGUCa---GCCGCCGCCccgccGUC-CGGCc -3'
miRNA:   3'- -CCAGgagcCGGCGGCGGu----CAGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 8066 0.66 0.645906
Target:  5'- cGUCg-CGGCCGCaGUCGGgcacggGCGGCg -3'
miRNA:   3'- cCAGgaGCCGGCGgCGGUCag----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 127342 0.66 0.644949
Target:  5'- cGUCCagCGauaccaaGCCGUCGCgauCGGcCGCGGCa -3'
miRNA:   3'- cCAGGa-GC-------CGGCGGCG---GUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 97279 0.66 0.63633
Target:  5'- cGGUag-UGGCCGCUGCCucgCGCaGCc -3'
miRNA:   3'- -CCAggaGCCGGCGGCGGucaGCGcCG- -5'
24757 5' -63.5 NC_005264.1 + 83281 0.66 0.626752
Target:  5'- --aUUUCGGCCGCaagGCCuuGcCGCGGUg -3'
miRNA:   3'- ccaGGAGCCGGCGg--CGGu-CaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 109892 0.66 0.617177
Target:  5'- --cCCgCGGCgcaaugCGCCGCgGG-CGCGGCc -3'
miRNA:   3'- ccaGGaGCCG------GCGGCGgUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 46877 0.66 0.625794
Target:  5'- cGUCCcugUCGGgCGCCGCguaccuccUAGcugcgccgcguguUCGCGGCu -3'
miRNA:   3'- cCAGG---AGCCgGCGGCG--------GUC-------------AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 6997 0.66 0.63633
Target:  5'- -cUCCUCGG-CGUgGCC---CGCGGCg -3'
miRNA:   3'- ccAGGAGCCgGCGgCGGucaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 56813 0.66 0.645906
Target:  5'- uGUCCUgcgcugcgCGGCgGCCcuaGCUAGcggcUCGUGGCu -3'
miRNA:   3'- cCAGGA--------GCCGgCGG---CGGUC----AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 522 0.66 0.617177
Target:  5'- uGGcCCa-GGCCGaCCGaUCAGaccCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGC-GGC-GGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 82162 0.66 0.645906
Target:  5'- aGGUgaCUCaaacuGCCguGCgGCCGGUCGgCGGCg -3'
miRNA:   3'- -CCAg-GAGc----CGG--CGgCGGUCAGC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 158855 0.66 0.63633
Target:  5'- --aCC-C-GCCGCCGCCGaaUGCGGCu -3'
miRNA:   3'- ccaGGaGcCGGCGGCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 127840 0.66 0.617177
Target:  5'- -cUCCgCGGCgGCCGgCGGUCuagaaccCGGCg -3'
miRNA:   3'- ccAGGaGCCGgCGGCgGUCAGc------GCCG- -5'
24757 5' -63.5 NC_005264.1 + 40278 0.66 0.617177
Target:  5'- -----cUGGaCGCCGCCGcGUCGCGGUu -3'
miRNA:   3'- ccaggaGCCgGCGGCGGU-CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 55703 0.66 0.645906
Target:  5'- cGUagCUCaGCuCGCCGCCuagacaggAGUCcGCGGCu -3'
miRNA:   3'- cCAg-GAGcCG-GCGGCGG--------UCAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 4584 0.66 0.645906
Target:  5'- cGGgaaCgcaGGCCcuccCCGCCAGcgcCGCGGCg -3'
miRNA:   3'- -CCag-Gag-CCGGc---GGCGGUCa--GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.