miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 159761 1.12 0.000455
Target:  5'- gGGUCCUCGGCCGCCGCCAGUCGCGGCg -3'
miRNA:   3'- -CCAGGAGCCGGCGGCGGUCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 40735 1.12 0.000455
Target:  5'- gGGUCCUCGGCCGCCGCCAGUCGCGGCg -3'
miRNA:   3'- -CCAGGAGCCGGCGGCGGUCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 103123 0.81 0.081713
Target:  5'- cGUCCggcgCGGuaGCCGCCGG-CGCGGCg -3'
miRNA:   3'- cCAGGa---GCCggCGGCGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 131653 0.76 0.169873
Target:  5'- cGGUCUgCGGugcCCGCCGCCAGaccguUgGCGGCa -3'
miRNA:   3'- -CCAGGaGCC---GGCGGCGGUC-----AgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 126278 0.75 0.195599
Target:  5'- uGGUCCgcggaggCGGCCauGCCGCUuucGGgcgCGCGGCc -3'
miRNA:   3'- -CCAGGa------GCCGG--CGGCGG---UCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 6214 0.74 0.216575
Target:  5'- cGUCCUuugaccccccgccgCGGCCGCCGCgAgacuugccgccuccGUCGCGGUc -3'
miRNA:   3'- cCAGGA--------------GCCGGCGGCGgU--------------CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 125241 0.74 0.216575
Target:  5'- cGUCCUuugaccccccgccgCGGCCGCCGCgAgacuugccgccuccGUCGCGGUc -3'
miRNA:   3'- cCAGGA--------------GCCGGCGGCGgU--------------CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 49785 0.74 0.240532
Target:  5'- uGUCCgucUCGcguaagaucGCCGCgGcCCAGUCGCGGCc -3'
miRNA:   3'- cCAGG---AGC---------CGGCGgC-GGUCAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 121871 0.74 0.240532
Target:  5'- cGGUCgcgCUCGcGCCGUCGCCcGcUGCGGCu -3'
miRNA:   3'- -CCAG---GAGC-CGGCGGCGGuCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 2845 0.74 0.240532
Target:  5'- cGGUCgcgCUCGcGCCGUCGCCcGcUGCGGCu -3'
miRNA:   3'- -CCAG---GAGC-CGGCGGCGGuCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 50312 0.74 0.240532
Target:  5'- cGGUUa-CGGCCuggaGCCGCgAGUaCGCGGCg -3'
miRNA:   3'- -CCAGgaGCCGG----CGGCGgUCA-GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 20144 0.73 0.269039
Target:  5'- aGG-CgaUGGCgCGCCGCCGGcgcccaagaUCGCGGCa -3'
miRNA:   3'- -CCaGgaGCCG-GCGGCGGUC---------AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 104120 0.73 0.269039
Target:  5'- cGUCCcccuggUGGCCGcCCGCCuAGUaaaCGCGGCc -3'
miRNA:   3'- cCAGGa-----GCCGGC-GGCGG-UCA---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 96221 0.73 0.281183
Target:  5'- --gCCUCgGGCCGCgacggCGCCGGcaaCGCGGCg -3'
miRNA:   3'- ccaGGAG-CCGGCG-----GCGGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 3777 0.73 0.281183
Target:  5'- gGGcCCUUGGucgaCCGCCGCCGaucugCGUGGCg -3'
miRNA:   3'- -CCaGGAGCC----GGCGGCGGUca---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 122803 0.73 0.281183
Target:  5'- gGGcCCUUGGucgaCCGCCGCCGaucugCGUGGCg -3'
miRNA:   3'- -CCaGGAGCC----GGCGGCGGUca---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 5821 0.72 0.293758
Target:  5'- aGUCCggcggCGGUgGCCGCCAcUCGCcuGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGGUcAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 124847 0.72 0.293758
Target:  5'- aGUCCggcggCGGUgGCCGCCAcUCGCcuGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGGUcAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 102832 0.72 0.293758
Target:  5'- aGUUCUUgGGCCGCgGCCA--CGCGGCc -3'
miRNA:   3'- cCAGGAG-CCGGCGgCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 67484 0.72 0.300208
Target:  5'- aGG-CCg-GGCCGCCGCCccgccgAGuccguuUCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGCGGCGG------UC------AGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.