miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 132227 0.72 0.306767
Target:  5'- cGGaUCCgUC-GCCGCCGCC-GUCGCcgGGCu -3'
miRNA:   3'- -CC-AGG-AGcCGGCGGCGGuCAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 159687 0.72 0.306767
Target:  5'- gGGUCgccguUUCGGuuGCCGCCAGgacgaugaCGaCGGCu -3'
miRNA:   3'- -CCAG-----GAGCCggCGGCGGUCa-------GC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 13200 0.72 0.306767
Target:  5'- cGGaUCCgUC-GCCGCCGCC-GUCGCcgGGCu -3'
miRNA:   3'- -CC-AGG-AGcCGGCGGCGGuCAGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 40661 0.72 0.306767
Target:  5'- gGGUCgccguUUCGGuuGCCGCCAGgacgaugaCGaCGGCu -3'
miRNA:   3'- -CCAG-----GAGCCggCGGCGGUCa-------GC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 83241 0.72 0.306767
Target:  5'- cGUCUa-GGCCGCCGCUgaugcgcuGG-CGCGGCg -3'
miRNA:   3'- cCAGGagCCGGCGGCGG--------UCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 36536 0.72 0.320213
Target:  5'- aGGagCCaUCGGCCGCgCGCCcGaaaGCGGCa -3'
miRNA:   3'- -CCa-GG-AGCCGGCG-GCGGuCag-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 26150 0.72 0.320213
Target:  5'- uGUCC-CaGGCCGCgGCgAGgacuuUCGCGGCa -3'
miRNA:   3'- cCAGGaG-CCGGCGgCGgUC-----AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 55901 0.71 0.325022
Target:  5'- -aUCCUgCGGCCGCCGCagcuGUCGaggaaaaagugaccCGGCu -3'
miRNA:   3'- ccAGGA-GCCGGCGGCGgu--CAGC--------------GCCG- -5'
24757 5' -63.5 NC_005264.1 + 58742 0.71 0.3412
Target:  5'- -aUCCgCGGCCGCCGCUgcgcuaucagAGgcgcacgCGCGGUg -3'
miRNA:   3'- ccAGGaGCCGGCGGCGG----------UCa------GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 125488 0.71 0.348413
Target:  5'- -cUCCUCGGCgGCgcggcgaaCGUCGGggugCGCGGCc -3'
miRNA:   3'- ccAGGAGCCGgCG--------GCGGUCa---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 6461 0.71 0.348413
Target:  5'- -cUCCUCGGCgGCgcggcgaaCGUCGGggugCGCGGCc -3'
miRNA:   3'- ccAGGAGCCGgCG--------GCGGUCa---GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 10527 0.71 0.363163
Target:  5'- gGGUCCUgugCGG-CGCCGCCcucAGgggCGCGGa -3'
miRNA:   3'- -CCAGGA---GCCgGCGGCGG---UCa--GCGCCg -5'
24757 5' -63.5 NC_005264.1 + 72457 0.71 0.363163
Target:  5'- -aUCggCGGgCGCCGCCGGUCGgaucguguacCGGCa -3'
miRNA:   3'- ccAGgaGCCgGCGGCGGUCAGC----------GCCG- -5'
24757 5' -63.5 NC_005264.1 + 129554 0.71 0.363163
Target:  5'- gGGUCCUgugCGG-CGCCGCCcucAGgggCGCGGa -3'
miRNA:   3'- -CCAGGA---GCCgGCGGCGG---UCa--GCGCCg -5'
24757 5' -63.5 NC_005264.1 + 141024 0.71 0.363163
Target:  5'- gGGUCCgaUUGGCgUGUCGCgAGUCuccauGCGGCa -3'
miRNA:   3'- -CCAGG--AGCCG-GCGGCGgUCAG-----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 139075 0.71 0.363163
Target:  5'- cGGuUCCUU-GCUGUCGCCuauuacgacGUCGCGGCu -3'
miRNA:   3'- -CC-AGGAGcCGGCGGCGGu--------CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 39538 0.71 0.370699
Target:  5'- --cUCUCuGCCGCCGCCccgcGGUucccgCGCGGCa -3'
miRNA:   3'- ccaGGAGcCGGCGGCGG----UCA-----GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 158565 0.71 0.370699
Target:  5'- --cUCUCuGCCGCCGCCccgcGGUucccgCGCGGCa -3'
miRNA:   3'- ccaGGAGcCGGCGGCGG----UCA-----GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 117658 0.71 0.370699
Target:  5'- gGGUUUgugUCgGGCCGCCaagaGCCAGUgGUGGUg -3'
miRNA:   3'- -CCAGG---AG-CCGGCGG----CGGUCAgCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 68966 0.71 0.370699
Target:  5'- aGGUCCgccgccUGGCuCGCCagcuuagcggGCCAGUggccCGCGGCc -3'
miRNA:   3'- -CCAGGa-----GCCG-GCGG----------CGGUCA----GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.