miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 5' -63.5 NC_005264.1 + 52500 0.66 0.63633
Target:  5'- uGGUCUacugaaGGCUGCaCGCC-GUCGaacaGGCu -3'
miRNA:   3'- -CCAGGag----CCGGCG-GCGGuCAGCg---CCG- -5'
24757 5' -63.5 NC_005264.1 + 107208 0.66 0.649734
Target:  5'- aGG-CggCGGCgCGCgcgguuggcauucggCGCCAGcCGCGGCu -3'
miRNA:   3'- -CCaGgaGCCG-GCG---------------GCGGUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 69656 0.66 0.617177
Target:  5'- cGUaCCUCaGCUGCucCGcCCAGUCuggaGCGGCg -3'
miRNA:   3'- cCA-GGAGcCGGCG--GC-GGUCAG----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 159305 0.66 0.617177
Target:  5'- -----cUGGaCGCCGCCGcGUCGCGGUu -3'
miRNA:   3'- ccaggaGCCgGCGGCGGU-CAGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 20034 0.66 0.598062
Target:  5'- aGUCCUaccaUGGCCuggcauGUCGCCA--CGCGGCc -3'
miRNA:   3'- cCAGGA----GCCGG------CGGCGGUcaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 80651 0.66 0.626752
Target:  5'- cGUCUaauacgaUGGCCGCCGCCgaccGGcCGCacGGCa -3'
miRNA:   3'- cCAGGa------GCCGGCGGCGG----UCaGCG--CCG- -5'
24757 5' -63.5 NC_005264.1 + 91223 0.66 0.598062
Target:  5'- --aUCUCuGCCGCCGCC--UCGcCGGUg -3'
miRNA:   3'- ccaGGAGcCGGCGGCGGucAGC-GCCG- -5'
24757 5' -63.5 NC_005264.1 + 91891 0.66 0.598062
Target:  5'- gGGUggUUGGCCGCgGCagcgaugggCGGgCGCGGCg -3'
miRNA:   3'- -CCAggAGCCGGCGgCG---------GUCaGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 133697 0.66 0.611436
Target:  5'- cGGUCCUU-GCCGCCGCgCacuggugcugccucuGGccgacagcccUUGCGGCg -3'
miRNA:   3'- -CCAGGAGcCGGCGGCG-G---------------UC----------AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 119549 0.66 0.617177
Target:  5'- uGGcCCa-GGCCGaCCGaUCAGaccCGCGGCg -3'
miRNA:   3'- -CCaGGagCCGGC-GGC-GGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 123568 0.66 0.626752
Target:  5'- uGGUCUUCGGCguCG-CGCCAaGUCuCGGg -3'
miRNA:   3'- -CCAGGAGCCG--GCgGCGGU-CAGcGCCg -5'
24757 5' -63.5 NC_005264.1 + 57985 0.66 0.626752
Target:  5'- aGUCCccgcgCGGCgGCCGUgGcUCaGCGGCc -3'
miRNA:   3'- cCAGGa----GCCGgCGGCGgUcAG-CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 157558 0.66 0.645906
Target:  5'- gGGUCa---GCCGCCGCCccgccGUC-CGGCc -3'
miRNA:   3'- -CCAGgagcCGGCGGCGGu----CAGcGCCG- -5'
24757 5' -63.5 NC_005264.1 + 121739 0.66 0.63633
Target:  5'- aGUCCagauaGGCCGCC-CCGGcCG-GGCc -3'
miRNA:   3'- cCAGGag---CCGGCGGcGGUCaGCgCCG- -5'
24757 5' -63.5 NC_005264.1 + 123611 0.66 0.645906
Target:  5'- cGGgaaCgcaGGCCcuccCCGCCAGcgcCGCGGCg -3'
miRNA:   3'- -CCag-Gag-CCGGc---GGCGGUCa--GCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 127093 0.66 0.645906
Target:  5'- cGUCg-CGGCCGCaGUCGGgcacggGCGGCg -3'
miRNA:   3'- cCAGgaGCCGGCGgCGGUCag----CGCCG- -5'
24757 5' -63.5 NC_005264.1 + 56813 0.66 0.645906
Target:  5'- uGUCCUgcgcugcgCGGCgGCCcuaGCUAGcggcUCGUGGCu -3'
miRNA:   3'- cCAGGA--------GCCGgCGG---CGGUC----AGCGCCG- -5'
24757 5' -63.5 NC_005264.1 + 71808 0.66 0.63633
Target:  5'- -cUCCgcauagCGGCCgaaGCCGCCcgcggGGUCGCGa- -3'
miRNA:   3'- ccAGGa-----GCCGG---CGGCGG-----UCAGCGCcg -5'
24757 5' -63.5 NC_005264.1 + 109600 0.66 0.63633
Target:  5'- uGUCUaUGGCCGguCCGCCGcuuUCGCGGa -3'
miRNA:   3'- cCAGGaGCCGGC--GGCGGUc--AGCGCCg -5'
24757 5' -63.5 NC_005264.1 + 9323 0.66 0.598062
Target:  5'- aGGUUCcguUCGuCC-CCGCCAGggGCGGCc -3'
miRNA:   3'- -CCAGG---AGCcGGcGGCGGUCagCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.