miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 40936 0.72 0.539192
Target:  5'- gCCGcGCCGCgCCCCGGucgaucgcagccgcaGCGGgcgACGGCGc -3'
miRNA:   3'- -GGC-UGGUGaGGGGUC---------------UGCCa--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 41039 1.09 0.002123
Target:  5'- gCCGACCACUCCCCAGACGGUACGGCGc -3'
miRNA:   3'- -GGCUGGUGAGGGGUCUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 43042 0.68 0.71965
Target:  5'- gCGACCAUUCCCCcgccGACuGUcGCGGUc -3'
miRNA:   3'- gGCUGGUGAGGGGu---CUGcCA-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 50984 0.66 0.864703
Target:  5'- aCGcuCCGCUaCCCGGcaGCGGUGCGGa- -3'
miRNA:   3'- gGCu-GGUGAgGGGUC--UGCCAUGCCgc -5'
24758 3' -58.9 NC_005264.1 + 51868 0.68 0.71965
Target:  5'- -aGACgGuCUCCUCGGGCGaG-ACGGCGg -3'
miRNA:   3'- ggCUGgU-GAGGGGUCUGC-CaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 52269 0.67 0.801371
Target:  5'- cCCGGCCACggcaUCUAcaauGCGGUACGcGCGa -3'
miRNA:   3'- -GGCUGGUGag--GGGUc---UGCCAUGC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 58256 0.67 0.809853
Target:  5'- cUCGGCCcgaUCCCgUGGGCGGcAUGGCGc -3'
miRNA:   3'- -GGCUGGug-AGGG-GUCUGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 58706 0.67 0.775113
Target:  5'- aCGGCCGCguuuaCUAGGCGG-GCGGCc -3'
miRNA:   3'- gGCUGGUGagg--GGUCUGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 60813 0.68 0.757008
Target:  5'- aCGACCGguUUCCCguguuuuGugGGUACGGUa -3'
miRNA:   3'- gGCUGGU--GAGGGgu-----CugCCAUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 67005 0.74 0.42696
Target:  5'- gCGAgUGCUgCCUGGACGGaGCGGCGg -3'
miRNA:   3'- gGCUgGUGAgGGGUCUGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 69355 0.67 0.792749
Target:  5'- gCCGGCCGCcagcagcgCCUCAGACaGcGCGGUu -3'
miRNA:   3'- -GGCUGGUGa-------GGGGUCUGcCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 71218 0.71 0.54491
Target:  5'- aCGACCACcUCCCGGA-GGUGCaGCa -3'
miRNA:   3'- gGCUGGUGaGGGGUCUgCCAUGcCGc -5'
24758 3' -58.9 NC_005264.1 + 74246 0.71 0.573766
Target:  5'- gCUGGCCGCgCUCCAGacacgGCGGUAgaGGCGg -3'
miRNA:   3'- -GGCUGGUGaGGGGUC-----UGCCAUg-CCGC- -5'
24758 3' -58.9 NC_005264.1 + 75302 0.67 0.809853
Target:  5'- gCgGACgACUCCUCGGaggccGCGG-GCGGCu -3'
miRNA:   3'- -GgCUGgUGAGGGGUC-----UGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 75404 0.66 0.849905
Target:  5'- aCCGuCUGCgcggCCgCGGGCaGuGUACGGCGg -3'
miRNA:   3'- -GGCuGGUGa---GGgGUCUG-C-CAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77404 0.67 0.775113
Target:  5'- gCCGGCaagCGCUCCCUguccgcGCGGU-CGGCGu -3'
miRNA:   3'- -GGCUG---GUGAGGGGuc----UGCCAuGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77754 0.73 0.452903
Target:  5'- gCCGGCCAC-Ca-CAaACGGUGCGGCGg -3'
miRNA:   3'- -GGCUGGUGaGggGUcUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77794 0.66 0.826366
Target:  5'- aCGcACCGCggCgCAGACGGcauugACGGCGc -3'
miRNA:   3'- gGC-UGGUGagGgGUCUGCCa----UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 78180 0.66 0.864703
Target:  5'- uCCG-CCugUgCCCGGaaagccggaugcGCGGaGCGGCa -3'
miRNA:   3'- -GGCuGGugAgGGGUC------------UGCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 78699 0.67 0.792749
Target:  5'- gCGACCACUUCCCGGggcucGCGaGcUGCcGCGa -3'
miRNA:   3'- gGCUGGUGAGGGGUC-----UGC-C-AUGcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.