miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 2978 0.66 0.826366
Target:  5'- uCCGACCACgaaUCCAucgagcgccGACuGGgcCGGCGg -3'
miRNA:   3'- -GGCUGGUGag-GGGU---------CUG-CCauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 3170 0.66 0.864703
Target:  5'- gCGACC-CUCCgCGucgcGACGGcGCGGgGa -3'
miRNA:   3'- gGCUGGuGAGGgGU----CUGCCaUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 4593 0.66 0.826366
Target:  5'- -aGGCC-CUCCCCGccaGCGccGCGGCGg -3'
miRNA:   3'- ggCUGGuGAGGGGUc--UGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 6449 0.7 0.651928
Target:  5'- gCUGGCggagaACUCCUCGG-CGGcGCGGCGa -3'
miRNA:   3'- -GGCUGg----UGAGGGGUCuGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 13427 0.68 0.71965
Target:  5'- gCGACCGCcgCCgCCgAGACGcgacGCGGCGg -3'
miRNA:   3'- gGCUGGUGa-GG-GG-UCUGCca--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 14193 0.66 0.849905
Target:  5'- gCGAUCGCcgucgCCCCAu-CGGccACGGCGg -3'
miRNA:   3'- gGCUGGUGa----GGGGUcuGCCa-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 14437 0.67 0.818187
Target:  5'- gCGGCCugccCUCCCCAauaGGcAUGGCGg -3'
miRNA:   3'- gGCUGGu---GAGGGGUcugCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 16021 0.66 0.852924
Target:  5'- aCGACCGCcgcgCCUCcgugcagucgagggaAGACGGgaGCGGCu -3'
miRNA:   3'- gGCUGGUGa---GGGG---------------UCUGCCa-UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 18401 0.66 0.857398
Target:  5'- aCGACCACcgUUCCGGcCGGcGCaGGCGc -3'
miRNA:   3'- gGCUGGUGa-GGGGUCuGCCaUG-CCGC- -5'
24758 3' -58.9 NC_005264.1 + 19994 0.66 0.834383
Target:  5'- aCCGACCGCgcucgCUCgCAucCGGUugGcGCGa -3'
miRNA:   3'- -GGCUGGUGa----GGG-GUcuGCCAugC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 24377 0.68 0.7478
Target:  5'- aCCGGCUucgcgGCUCCCCcGGCGGcgaGGUa -3'
miRNA:   3'- -GGCUGG-----UGAGGGGuCUGCCaugCCGc -5'
24758 3' -58.9 NC_005264.1 + 25894 0.66 0.864703
Target:  5'- -aGAUUGCgaugCCCCAGGCGaacagAUGGCGg -3'
miRNA:   3'- ggCUGGUGa---GGGGUCUGCca---UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 26141 0.66 0.857398
Target:  5'- -gGGCCAUgaugUCCCAGGCc--GCGGCGa -3'
miRNA:   3'- ggCUGGUGa---GGGGUCUGccaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 31558 0.71 0.582496
Target:  5'- aCGGCCAUUCCcgacguggaggcgCCAGA-GGUGgGGCGa -3'
miRNA:   3'- gGCUGGUGAGG-------------GGUCUgCCAUgCCGC- -5'
24758 3' -58.9 NC_005264.1 + 36625 0.67 0.809853
Target:  5'- cCCGAUCACagauuggCCCCGGAgcgaugaguuCGGUaagccaaccuGCGGCu -3'
miRNA:   3'- -GGCUGGUGa------GGGGUCU----------GCCA----------UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 38734 0.8 0.196792
Target:  5'- -gGACCcCUCCCCGGACGGgcUGGCc -3'
miRNA:   3'- ggCUGGuGAGGGGUCUGCCauGCCGc -5'
24758 3' -58.9 NC_005264.1 + 39069 0.7 0.602962
Target:  5'- gCGGuCCAC-CCCCGGACGccggcuCGGCGg -3'
miRNA:   3'- gGCU-GGUGaGGGGUCUGCcau---GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 40083 0.67 0.809853
Target:  5'- cCCGAgCGCUUCgUAGAcuCGGUccuCGGCGu -3'
miRNA:   3'- -GGCUgGUGAGGgGUCU--GCCAu--GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 40256 0.73 0.479682
Target:  5'- aCGugCGgUaCCCCAacGCGGUGCGGCGc -3'
miRNA:   3'- gGCugGUgA-GGGGUc-UGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 40449 0.73 0.479682
Target:  5'- cUCG-CCGC-CCCCAGACGGaGCGGa- -3'
miRNA:   3'- -GGCuGGUGaGGGGUCUGCCaUGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.