miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 160066 1.09 0.002123
Target:  5'- gCCGACCACUCCCCAGACGGUACGGCGc -3'
miRNA:   3'- -GGCUGGUGAGGGGUCUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 41039 1.09 0.002123
Target:  5'- gCCGACCACUCCCCAGACGGUACGGCGc -3'
miRNA:   3'- -GGCUGGUGAGGGGUCUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 157760 0.8 0.196792
Target:  5'- -gGACCcCUCCCCGGACGGgcUGGCc -3'
miRNA:   3'- ggCUGGuGAGGGGUCUGCCauGCCGc -5'
24758 3' -58.9 NC_005264.1 + 38734 0.8 0.196792
Target:  5'- -gGACCcCUCCCCGGACGGgcUGGCc -3'
miRNA:   3'- ggCUGGuGAGGGGUCUGCCauGCCGc -5'
24758 3' -58.9 NC_005264.1 + 97342 0.77 0.291559
Target:  5'- gCCGAUCACUCCguaUCGGACGGgggagagcaGCGGCGu -3'
miRNA:   3'- -GGCUGGUGAGG---GGUCUGCCa--------UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 108494 0.74 0.401918
Target:  5'- gCUGAUC-CUCUCUAGugGgGUACGGCGu -3'
miRNA:   3'- -GGCUGGuGAGGGGUCugC-CAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 67005 0.74 0.42696
Target:  5'- gCGAgUGCUgCCUGGACGGaGCGGCGg -3'
miRNA:   3'- gGCUgGUGAgGGGUCUGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77754 0.73 0.452903
Target:  5'- gCCGGCCAC-Ca-CAaACGGUGCGGCGg -3'
miRNA:   3'- -GGCUGGUGaGggGUcUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 40256 0.73 0.479682
Target:  5'- aCGugCGgUaCCCCAacGCGGUGCGGCGc -3'
miRNA:   3'- gGCugGUgA-GGGGUc-UGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 159476 0.73 0.479682
Target:  5'- cUCG-CCGC-CCCCAGACGGaGCGGa- -3'
miRNA:   3'- -GGCuGGUGaGGGGUCUGCCaUGCCgc -5'
24758 3' -58.9 NC_005264.1 + 40449 0.73 0.479682
Target:  5'- cUCG-CCGC-CCCCAGACGGaGCGGa- -3'
miRNA:   3'- -GGCuGGUGaGGGGUCUGCCaUGCCgc -5'
24758 3' -58.9 NC_005264.1 + 147717 0.73 0.479682
Target:  5'- -aGACCAUUCCCCAGAgaaaGGUG-GGCc -3'
miRNA:   3'- ggCUGGUGAGGGGUCUg---CCAUgCCGc -5'
24758 3' -58.9 NC_005264.1 + 101750 0.73 0.48878
Target:  5'- gCGGCgCGCUCCCCaaaGGACGuGgugGCGGCc -3'
miRNA:   3'- gGCUG-GUGAGGGG---UCUGC-Ca--UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 159963 0.72 0.539192
Target:  5'- gCCGcGCCGCgCCCCGGucgaucgcagccgcaGCGGgcgACGGCGc -3'
miRNA:   3'- -GGC-UGGUGaGGGGUC---------------UGCCa--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 40936 0.72 0.539192
Target:  5'- gCCGcGCCGCgCCCCGGucgaucgcagccgcaGCGGgcgACGGCGc -3'
miRNA:   3'- -GGC-UGGUGaGGGGUC---------------UGCCa--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 71218 0.71 0.54491
Target:  5'- aCGACCACcUCCCGGA-GGUGCaGCa -3'
miRNA:   3'- gGCUGGUGaGGGGUCUgCCAUGcCGc -5'
24758 3' -58.9 NC_005264.1 + 116221 0.71 0.54491
Target:  5'- uUCGGCCACgcggUCCCAcGACGGUGcCGGg- -3'
miRNA:   3'- -GGCUGGUGa---GGGGU-CUGCCAU-GCCgc -5'
24758 3' -58.9 NC_005264.1 + 74246 0.71 0.573766
Target:  5'- gCUGGCCGCgCUCCAGacacgGCGGUAgaGGCGg -3'
miRNA:   3'- -GGCUGGUGaGGGGUC-----UGCCAUg-CCGC- -5'
24758 3' -58.9 NC_005264.1 + 129578 0.71 0.573766
Target:  5'- aCCGAUCuugcgcGCUCUgCAGGCGcUGCGGCGc -3'
miRNA:   3'- -GGCUGG------UGAGGgGUCUGCcAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 97593 0.71 0.573766
Target:  5'- aCCGuACCGCUUCCuCGGccgcgGCGGcUACGGCu -3'
miRNA:   3'- -GGC-UGGUGAGGG-GUC-----UGCC-AUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.