miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 160066 1.09 0.002123
Target:  5'- gCCGACCACUCCCCAGACGGUACGGCGc -3'
miRNA:   3'- -GGCUGGUGAGGGGUCUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 159963 0.72 0.539192
Target:  5'- gCCGcGCCGCgCCCCGGucgaucgcagccgcaGCGGgcgACGGCGc -3'
miRNA:   3'- -GGC-UGGUGaGGGGUC---------------UGCCa--UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 159818 0.67 0.783993
Target:  5'- uCCGACCAUgaucggaCCCCAGAgccgagccgcCGGcccaguCGGCGc -3'
miRNA:   3'- -GGCUGGUGa------GGGGUCU----------GCCau----GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 159476 0.73 0.479682
Target:  5'- cUCG-CCGC-CCCCAGACGGaGCGGa- -3'
miRNA:   3'- -GGCuGGUGaGGGGUCUGCCaUGCCgc -5'
24758 3' -58.9 NC_005264.1 + 158096 0.7 0.602962
Target:  5'- gCGGuCCAC-CCCCGGACGccggcuCGGCGg -3'
miRNA:   3'- gGCU-GGUGaGGGGUCUGCcau---GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 157760 0.8 0.196792
Target:  5'- -gGACCcCUCCCCGGACGGgcUGGCc -3'
miRNA:   3'- ggCUGGuGAGGGGUCUGCCauGCCGc -5'
24758 3' -58.9 NC_005264.1 + 157663 0.67 0.809853
Target:  5'- uUCGGCCGCgagggCCUCcgaaaggcuucGGACGaUGCGGCGc -3'
miRNA:   3'- -GGCUGGUGa----GGGG-----------UCUGCcAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 155868 0.7 0.603939
Target:  5'- cCCGcGCCaACUCUCaucaucacuucaguGACGGUGCGGCGc -3'
miRNA:   3'- -GGC-UGG-UGAGGGgu------------CUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 152751 0.7 0.602962
Target:  5'- aCGGCCGCgaugCCCCcGGCGGgagauuccgccGCGGCu -3'
miRNA:   3'- gGCUGGUGa---GGGGuCUGCCa----------UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 150585 0.71 0.582496
Target:  5'- aCGGCCAUUCCcgacguggaggcgCCAGA-GGUGgGGCGa -3'
miRNA:   3'- gGCUGGUGAGG-------------GGUCUgCCAUgCCGC- -5'
24758 3' -58.9 NC_005264.1 + 147717 0.73 0.479682
Target:  5'- -aGACCAUUCCCCAGAgaaaGGUG-GGCc -3'
miRNA:   3'- ggCUGGUGAGGGGUCUg---CCAUgCCGc -5'
24758 3' -58.9 NC_005264.1 + 146573 0.68 0.757008
Target:  5'- uCUGGCCGCgCCUCAGGCGauGUGuCGGUa -3'
miRNA:   3'- -GGCUGGUGaGGGGUCUGC--CAU-GCCGc -5'
24758 3' -58.9 NC_005264.1 + 146390 0.66 0.857398
Target:  5'- uUCGACCACguucacaCCCgCGGGCaGGccccGCGGCa -3'
miRNA:   3'- -GGCUGGUGa------GGG-GUCUG-CCa---UGCCGc -5'
24758 3' -58.9 NC_005264.1 + 144304 0.71 0.583468
Target:  5'- gCCGGCgCGC-CCUCAGGgGGagACGGCGc -3'
miRNA:   3'- -GGCUG-GUGaGGGGUCUgCCa-UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 141485 0.67 0.775113
Target:  5'- aCCGGCCGaggcggCCCgGGACGa-ACGGCa -3'
miRNA:   3'- -GGCUGGUga----GGGgUCUGCcaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 138581 0.66 0.863981
Target:  5'- aCCGACUaagguugACUUCCgCGGcaGCGGUGgGGUGc -3'
miRNA:   3'- -GGCUGG-------UGAGGG-GUC--UGCCAUgCCGC- -5'
24758 3' -58.9 NC_005264.1 + 134835 0.67 0.809853
Target:  5'- cCCGACCGa--CCUGGaucgaugggccGCGGcUACGGCGg -3'
miRNA:   3'- -GGCUGGUgagGGGUC-----------UGCC-AUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 133361 0.66 0.857398
Target:  5'- gCGGCC-CUCCUC-GACGacuCGGCGa -3'
miRNA:   3'- gGCUGGuGAGGGGuCUGCcauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 133035 0.67 0.818187
Target:  5'- -aGACC-CUUUCCGcGGCGGUGCGcGUGu -3'
miRNA:   3'- ggCUGGuGAGGGGU-CUGCCAUGC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 132454 0.68 0.71965
Target:  5'- gCGACCGCcgCCgCCgAGACGcgacGCGGCGg -3'
miRNA:   3'- gGCUGGUGa-GG-GG-UCUGCca--UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.